Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FQZ25_RS25005 Genome accession   NZ_CP042270
Coordinates   4864685..4865464 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain GA-A07     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4859685..4870464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQZ25_RS24980 (FQZ25_24995) uppS 4860433..4861209 (-) 777 WP_000971296.1 isoprenyl transferase -
  FQZ25_RS24985 (FQZ25_25000) frr 4861295..4861852 (-) 558 WP_000531501.1 ribosome recycling factor -
  FQZ25_RS24990 (FQZ25_25005) pyrH 4861855..4862577 (-) 723 WP_000042668.1 UMP kinase -
  FQZ25_RS24995 (FQZ25_25010) tsf 4862644..4863531 (-) 888 WP_001018578.1 translation elongation factor Ts -
  FQZ25_RS25000 (FQZ25_25015) rpsB 4863635..4864336 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  FQZ25_RS25005 (FQZ25_25020) codY 4864685..4865464 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FQZ25_RS25010 (FQZ25_25025) hslU 4865542..4866933 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  FQZ25_RS25015 (FQZ25_25030) hslV 4866956..4867498 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  FQZ25_RS25020 (FQZ25_25035) xerC 4867541..4868440 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  FQZ25_RS25025 (FQZ25_25040) trmFO 4868506..4869810 (-) 1305 WP_152305490.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=376498 FQZ25_RS25005 WP_000421290.1 4864685..4865464(-) (codY) [Bacillus thuringiensis strain GA-A07]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=376498 FQZ25_RS25005 WP_000421290.1 4864685..4865464(-) (codY) [Bacillus thuringiensis strain GA-A07]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment