Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FQZ25_RS25005 Genome accession   NZ_CP042270
Coordinates   4864685..4865464 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain GA-A07     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 4839391..4901150 4864685..4865464 within 0


Gene organization within MGE regions


Location: 4839391..4901150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQZ25_RS24895 (FQZ25_24910) - 4839961..4840860 (-) 900 WP_000868217.1 polysaccharide deacetylase family protein -
  FQZ25_RS24900 (FQZ25_24915) pnp 4841012..4843150 (-) 2139 WP_000076737.1 polyribonucleotide nucleotidyltransferase -
  FQZ25_RS24905 (FQZ25_24920) rpsO 4843311..4843580 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  FQZ25_RS24910 (FQZ25_24925) ribF 4843681..4844652 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  FQZ25_RS24915 (FQZ25_24930) truB 4844696..4845619 (-) 924 WP_000399352.1 tRNA pseudouridine(55) synthase TruB -
  FQZ25_RS24920 (FQZ25_24935) rbfA 4845706..4846062 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  FQZ25_RS24925 (FQZ25_24940) - 4846078..4846359 (-) 282 WP_000582363.1 DUF503 family protein -
  FQZ25_RS24930 (FQZ25_24945) infB 4846356..4848416 (-) 2061 WP_000036343.1 translation initiation factor IF-2 -
  FQZ25_RS24935 (FQZ25_24950) - 4848421..4848732 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  FQZ25_RS24940 (FQZ25_24955) - 4848733..4849005 (-) 273 WP_000071127.1 YlxR family protein -
  FQZ25_RS24945 (FQZ25_24960) nusA 4849017..4850123 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  FQZ25_RS24950 (FQZ25_24965) rimP 4850141..4850611 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  FQZ25_RS24955 (FQZ25_24970) - 4850948..4855249 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  FQZ25_RS24960 (FQZ25_24975) - 4855374..4857074 (-) 1701 WP_000814299.1 proline--tRNA ligase -
  FQZ25_RS24965 (FQZ25_24980) rseP 4857184..4858440 (-) 1257 WP_001090243.1 RIP metalloprotease RseP -
  FQZ25_RS24970 (FQZ25_24985) dxr 4858458..4859600 (-) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  FQZ25_RS24975 (FQZ25_24990) cdsA 4859624..4860415 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  FQZ25_RS24980 (FQZ25_24995) uppS 4860433..4861209 (-) 777 WP_000971296.1 isoprenyl transferase -
  FQZ25_RS24985 (FQZ25_25000) frr 4861295..4861852 (-) 558 WP_000531501.1 ribosome recycling factor -
  FQZ25_RS24990 (FQZ25_25005) pyrH 4861855..4862577 (-) 723 WP_000042668.1 UMP kinase -
  FQZ25_RS24995 (FQZ25_25010) tsf 4862644..4863531 (-) 888 WP_001018578.1 translation elongation factor Ts -
  FQZ25_RS25000 (FQZ25_25015) rpsB 4863635..4864336 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  FQZ25_RS25005 (FQZ25_25020) codY 4864685..4865464 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FQZ25_RS25010 (FQZ25_25025) hslU 4865542..4866933 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  FQZ25_RS25015 (FQZ25_25030) hslV 4866956..4867498 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  FQZ25_RS25020 (FQZ25_25035) xerC 4867541..4868440 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  FQZ25_RS25025 (FQZ25_25040) trmFO 4868506..4869810 (-) 1305 WP_152305490.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FQZ25_RS25030 (FQZ25_25045) topA 4869859..4871937 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  FQZ25_RS25035 (FQZ25_25050) dprA 4872082..4872951 (-) 870 WP_152305491.1 DNA-processing protein DprA -
  FQZ25_RS25040 (FQZ25_25055) sucD 4873040..4873942 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  FQZ25_RS25045 (FQZ25_25060) sucC 4873962..4875122 (-) 1161 WP_152305492.1 ADP-forming succinate--CoA ligase subunit beta -
  FQZ25_RS25050 (FQZ25_25065) - 4875317..4876090 (-) 774 WP_098212676.1 ribonuclease HII -
  FQZ25_RS25055 (FQZ25_25070) ylqF 4876147..4877037 (-) 891 WP_152305493.1 ribosome biogenesis GTPase YlqF -
  FQZ25_RS25060 (FQZ25_25075) lepB 4877058..4877609 (-) 552 WP_000711853.1 signal peptidase I -
  FQZ25_RS25065 (FQZ25_25080) rplS 4877711..4878055 (-) 345 WP_001186515.1 50S ribosomal protein L19 -
  FQZ25_RS25070 (FQZ25_25085) trmD 4878202..4878936 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FQZ25_RS25075 (FQZ25_25090) rimM 4878936..4879451 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  FQZ25_RS25080 (FQZ25_25095) - 4879573..4879800 (-) 228 WP_000737401.1 KH domain-containing protein -
  FQZ25_RS25085 (FQZ25_25100) rpsP 4879815..4880087 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  FQZ25_RS25090 (FQZ25_25105) ffh 4880189..4881538 (-) 1350 WP_000863460.1 signal recognition particle protein -
  FQZ25_RS25095 (FQZ25_25110) - 4881551..4881883 (-) 333 WP_000891062.1 putative DNA-binding protein -
  FQZ25_RS25100 (FQZ25_25115) ftsY 4882017..4883006 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  FQZ25_RS25105 (FQZ25_25120) smc 4883022..4886591 (-) 3570 WP_000478973.1 chromosome segregation protein SMC -
  FQZ25_RS25110 (FQZ25_25125) rncS 4886738..4887475 (-) 738 WP_001146875.1 ribonuclease III -
  FQZ25_RS25115 (FQZ25_25130) acpP 4887534..4887767 (-) 234 WP_000786062.1 acyl carrier protein -
  FQZ25_RS25120 (FQZ25_25135) fabG 4887837..4888577 (-) 741 WP_098212674.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  FQZ25_RS25125 (FQZ25_25140) fabD 4888577..4889521 (-) 945 WP_000515899.1 ACP S-malonyltransferase -
  FQZ25_RS25130 (FQZ25_25145) plsX 4889536..4890528 (-) 993 WP_152305494.1 phosphate acyltransferase PlsX -
  FQZ25_RS25135 (FQZ25_25150) fapR 4890525..4891118 (-) 594 WP_000747348.1 transcription factor FapR -
  FQZ25_RS25140 (FQZ25_25155) recG 4891207..4893255 (-) 2049 WP_001000816.1 ATP-dependent DNA helicase RecG -
  FQZ25_RS25145 (FQZ25_25160) - 4893546..4895222 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  FQZ25_RS25150 (FQZ25_25165) - 4895245..4895607 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  FQZ25_RS25155 (FQZ25_25170) rpmB 4895984..4896172 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  FQZ25_RS25160 (FQZ25_25175) spoVM 4896246..4896326 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  FQZ25_RS25165 (FQZ25_25180) - 4896393..4897073 (-) 681 WP_002026234.1 thiamine diphosphokinase -
  FQZ25_RS25170 (FQZ25_25185) rpe 4897142..4897786 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  FQZ25_RS25175 (FQZ25_25190) rsgA 4897789..4898670 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  FQZ25_RS25180 (FQZ25_25195) pknB 4898917..4900890 (-) 1974 WP_000904747.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=376498 FQZ25_RS25005 WP_000421290.1 4864685..4865464(-) (codY) [Bacillus thuringiensis strain GA-A07]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=376498 FQZ25_RS25005 WP_000421290.1 4864685..4865464(-) (codY) [Bacillus thuringiensis strain GA-A07]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment