Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPSAT_RS02070 Genome accession   NC_017359
Coordinates   411149..412324 (-) Length   391 a.a.
NCBI ID   WP_000060224.1    Uniprot ID   -
Organism   Helicobacter pylori Sat464     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 406149..417324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSAT_RS02035 (HPSAT_02075) - 406457..406771 (+) 315 WP_000868000.1 hypothetical protein -
  HPSAT_RS02040 (HPSAT_02080) - 406749..407525 (+) 777 WP_000602378.1 RNA polymerase sigma factor FliA -
  HPSAT_RS02045 (HPSAT_02085) fliM 407518..408582 (+) 1065 WP_000763580.1 flagellar motor switch protein FliM -
  HPSAT_RS02050 (HPSAT_02090) fliY 408586..409458 (+) 873 WP_001150642.1 flagellar motor switch protein FliY -
  HPSAT_RS02055 (HPSAT_02095) - 409487..410023 (+) 537 WP_000964069.1 YhcH/YjgK/YiaL family protein -
  HPSAT_RS02060 (HPSAT_02100) - 410020..410517 (+) 498 WP_000780302.1 DUF2147 domain-containing protein -
  HPSAT_RS02065 (HPSAT_02105) fur 410537..410989 (-) 453 WP_000824987.1 ferric iron uptake transcriptional regulator -
  HPSAT_RS02070 (HPSAT_02110) rarA 411149..412324 (-) 1176 WP_000060224.1 replication-associated recombination protein A Machinery gene
  HPSAT_RS02075 (HPSAT_02115) - 412321..412692 (-) 372 WP_000333001.1 heat shock protein transcriptional repressor HspR -
  HPSAT_RS02080 (HPSAT_02120) - 412702..413568 (-) 867 WP_000045777.1 DnaJ family protein -
  HPSAT_RS02085 (HPSAT_02125) - 413736..414986 (+) 1251 WP_001199605.1 hypothetical protein -
  HPSAT_RS02090 (HPSAT_02130) - 415050..415916 (-) 867 WP_079994503.1 5'-3' exonuclease -
  HPSAT_RS02100 (HPSAT_02140) - 416153..417049 (-) 897 WP_000697556.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43775.38 Da        Isoelectric Point: 7.7629

>NTDB_id=37635 HPSAT_RS02070 WP_000060224.1 411149..412324(-) (rarA) [Helicobacter pylori Sat464]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRSHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=37635 HPSAT_RS02070 WP_000060224.1 411149..412324(-) (rarA) [Helicobacter pylori Sat464]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGTCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTTAAGCTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATTCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAAAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGTCTCATA
GCCTAAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCTAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCTCTAAATTTAGCCGCTTCTTGCTTGCTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389

Multiple sequence alignment