Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FQB22_RS17280 Genome accession   NZ_CP042252
Coordinates   3372610..3373389 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain KNU11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3367610..3378389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQB22_RS17260 trmFO 3368307..3369611 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FQB22_RS17265 xerC 3369678..3370592 (+) 915 WP_011197974.1 tyrosine recombinase XerC -
  FQB22_RS17270 hslV 3370606..3371151 (+) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  FQB22_RS17275 hslU 3371168..3372571 (+) 1404 WP_003181754.1 HslU--HslV peptidase ATPase subunit -
  FQB22_RS17280 codY 3372610..3373389 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FQB22_RS17285 flgB 3373743..3374132 (+) 390 WP_016886439.1 flagellar basal body rod protein FlgB -
  FQB22_RS17290 flgC 3374132..3374584 (+) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  FQB22_RS17295 fliE 3374598..3374915 (+) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  FQB22_RS17300 fliF 3374966..3376567 (+) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  FQB22_RS17305 fliG 3376581..3377597 (+) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  FQB22_RS17310 fliH 3377581..3378348 (+) 768 WP_016885763.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=376304 FQB22_RS17280 WP_003181756.1 3372610..3373389(+) (codY) [Bacillus licheniformis strain KNU11]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=376304 FQB22_RS17280 WP_003181756.1 3372610..3373389(+) (codY) [Bacillus licheniformis strain KNU11]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment