Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   D5R83_RS07700 Genome accession   NZ_CP042211
Coordinates   1579336..1579617 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain B128 7.13     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1574336..1584617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R83_RS07680 (D5R83_07680) - 1575055..1576395 (-) 1341 WP_001879388.1 COG3014 family protein -
  D5R83_RS07690 (D5R83_07690) comB4 1576708..1579071 (-) 2364 WP_000890512.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  D5R83_RS07695 (D5R83_07695) comB3 1579073..1579336 (-) 264 WP_000584958.1 hypothetical protein Machinery gene
  D5R83_RS07700 (D5R83_07700) comB2 1579336..1579617 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  D5R83_RS07705 (D5R83_07705) - 1579762..1580589 (-) 828 WP_001154960.1 DUF5718 family protein -
  D5R83_RS07710 (D5R83_07710) - 1580679..1581731 (-) 1053 WP_000721172.1 MnmA/TRMU family protein -
  D5R83_RS07715 (D5R83_07715) dnaG 1581728..1583407 (-) 1680 WP_000601628.1 DNA primase -
  D5R83_RS07725 (D5R83_07725) groES 1583693..1584049 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=376012 D5R83_RS07700 WP_001272686.1 1579336..1579617(-) (comB2) [Helicobacter pylori strain B128 7.13]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=376012 D5R83_RS07700 WP_001272686.1 1579336..1579617(-) (comB2) [Helicobacter pylori strain B128 7.13]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment