Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPCU_RS02375 Genome accession   NC_017358
Coordinates   483055..484230 (-) Length   391 a.a.
NCBI ID   WP_000060227.1    Uniprot ID   -
Organism   Helicobacter pylori Cuz20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 478055..489230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPCU_RS02340 (HPCU_02405) - 478363..478677 (+) 315 WP_000868006.1 hypothetical protein -
  HPCU_RS02345 (HPCU_02410) - 478655..479431 (+) 777 WP_000602374.1 RNA polymerase sigma factor FliA -
  HPCU_RS02350 (HPCU_02415) fliM 479424..480488 (+) 1065 WP_000763580.1 flagellar motor switch protein FliM -
  HPCU_RS02355 (HPCU_02420) fliY 480492..481364 (+) 873 WP_001150706.1 flagellar motor switch protein FliY -
  HPCU_RS02360 (HPCU_02425) - 481393..481929 (+) 537 WP_000964036.1 YhcH/YjgK/YiaL family protein -
  HPCU_RS02365 (HPCU_02430) - 481926..482423 (+) 498 WP_000780306.1 DUF2147 domain-containing protein -
  HPCU_RS02370 (HPCU_02435) fur 482443..482895 (-) 453 WP_000824987.1 ferric iron uptake transcriptional regulator -
  HPCU_RS02375 (HPCU_02440) rarA 483055..484230 (-) 1176 WP_000060227.1 replication-associated recombination protein A Machinery gene
  HPCU_RS02380 (HPCU_02445) - 484227..484598 (-) 372 WP_000333000.1 heat shock protein transcriptional repressor HspR -
  HPCU_RS02385 (HPCU_02450) - 484608..485474 (-) 867 WP_000045793.1 DnaJ family protein -
  HPCU_RS02390 (HPCU_02455) - 485642..486892 (+) 1251 WP_001199602.1 hypothetical protein -
  HPCU_RS02395 (HPCU_02460) - 486955..487821 (-) 867 WP_079991980.1 5'-3' exonuclease -
  HPCU_RS02405 (HPCU_02470) - 488058..488954 (-) 897 WP_000697608.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43863.49 Da        Isoelectric Point: 7.7629

>NTDB_id=37596 HPCU_RS02375 WP_000060227.1 483055..484230(-) (rarA) [Helicobacter pylori Cuz20]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEVRIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=37596 HPCU_RS02375 WP_000060227.1 483055..484230(-) (rarA) [Helicobacter pylori Cuz20]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTTAAGCTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTGCCCATTATGGAAAAAGATCACGCTTTGATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGTGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGTGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCCAACACGGCTTAT
AGAGCGATCAACCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTACTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTGGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389

Multiple sequence alignment