Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPCU_RS01175 Genome accession   NC_017358
Coordinates   230864..231124 (+) Length   86 a.a.
NCBI ID   WP_000602756.1    Uniprot ID   -
Organism   Helicobacter pylori Cuz20     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 225864..236124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPCU_RS08510 (HPCU_01170) - 226192..226305 (-) 114 WP_001155911.1 glycosyltransferase family 8 protein -
  HPCU_RS01155 (HPCU_01175) hofA 226455..227807 (+) 1353 WP_041202358.1 outer membrane beta-barrel protein HofA -
  HPCU_RS01160 (HPCU_01180) - 227880..228644 (+) 765 WP_000667750.1 hypothetical protein -
  HPCU_RS01165 (HPCU_01185) - 228655..230571 (+) 1917 WP_000332152.1 toprim domain-containing protein -
  HPCU_RS01170 (HPCU_01190) - 230561..230863 (+) 303 WP_000649843.1 TrbC/VirB2 family protein -
  HPCU_RS01175 (HPCU_01195) comB3 230864..231124 (+) 261 WP_000602756.1 hypothetical protein Machinery gene
  HPCU_RS01180 (HPCU_01200) - 231137..233635 (+) 2499 WP_000478388.1 VirB4 family type IV secretion system protein -
  HPCU_RS01185 (HPCU_01205) - 233628..235562 (+) 1935 WP_000277566.1 type IA DNA topoisomerase -
  HPCU_RS08690 (HPCU_01210) - 235562..235690 (+) 129 WP_000243255.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10154.04 Da        Isoelectric Point: 4.6082

>NTDB_id=37587 HPCU_RS01175 WP_000602756.1 230864..231124(+) (comB3) [Helicobacter pylori Cuz20]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALITMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=37587 HPCU_RS01175 WP_000602756.1 230864..231124(+) (comB3) [Helicobacter pylori Cuz20]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGCGCTTCTTTCTTATTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAA
TAACAATGTTTTACATACTAGAATTTTTTGATGAAGATATTACAAACATTATTTTGGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment