Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   HPV225_RS02055 Genome accession   NC_017355
Coordinates   412781..413956 (-) Length   391 a.a.
NCBI ID   WP_000060202.1    Uniprot ID   -
Organism   Helicobacter pylori v225d     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 407781..418956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPV225_RS02020 (HPV225_0435) - 408098..408412 (+) 315 WP_000868000.1 hypothetical protein -
  HPV225_RS02025 (HPV225_0436) - 408390..409166 (+) 777 WP_000602377.1 RNA polymerase sigma factor FliA -
  HPV225_RS02030 (HPV225_0437) fliM 409159..410223 (+) 1065 WP_000763608.1 flagellar motor switch protein FliM -
  HPV225_RS02035 (HPV225_0438) fliY 410227..411090 (+) 864 WP_001150679.1 flagellar motor switch protein FliY -
  HPV225_RS02040 (HPV225_0439) - 411119..411655 (+) 537 WP_000964054.1 YhcH/YjgK/YiaL family protein -
  HPV225_RS02045 (HPV225_0440) - 411652..412149 (+) 498 WP_000780280.1 DUF2147 domain-containing protein -
  HPV225_RS02050 (HPV225_0441) fur 412169..412621 (-) 453 WP_000824987.1 ferric iron uptake transcriptional regulator -
  HPV225_RS02055 (HPV225_0442) rarA 412781..413956 (-) 1176 WP_000060202.1 replication-associated recombination protein A Machinery gene
  HPV225_RS02060 (HPV225_0443) - 413953..414324 (-) 372 WP_000333001.1 heat shock protein transcriptional repressor HspR -
  HPV225_RS02065 (HPV225_0444) - 414334..415200 (-) 867 WP_000045795.1 DnaJ family protein -
  HPV225_RS02070 (HPV225_0445) - 415367..416617 (+) 1251 WP_001199590.1 hypothetical protein -
  HPV225_RS02075 (HPV225_0446) - 416639..417505 (-) 867 WP_079991747.1 5'-3' exonuclease -
  HPV225_RS02080 (HPV225_0448) - 417731..418627 (-) 897 WP_000697576.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43711.24 Da        Isoelectric Point: 7.7775

>NTDB_id=37557 HPV225_RS02055 WP_000060202.1 412781..413956(-) (rarA) [Helicobacter pylori v225d]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIAHALERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDNLCAK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=37557 HPV225_RS02055 WP_000060202.1 412781..413956(-) (rarA) [Helicobacter pylori v225d]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGTCAAGAGCATCTAATAGGGAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCATGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCTCACGCGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTTAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTGACCCCCCTAAACAAGAGCGATTTAGACAATCTTTGTGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAAAAACGCTGCAATCCTTACGGCCTCATA
GCCTGAATGACGGATCTTATAGTGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCAGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGTGAAGATATTGGTAACGCTAACCCGAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCACGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTGGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

36.893

100

0.389