Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   G9W35_RS07025 Genome accession   NZ_CP049845
Coordinates   1481133..1481600 (-) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain UPEC-245U/190328     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476133..1486600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9W35_RS07000 (G9W35_06945) rpsG 1476274..1476744 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  G9W35_RS07005 (G9W35_06950) fusA 1476841..1478955 (+) 2115 WP_000124700.1 elongation factor G -
  G9W35_RS07010 (G9W35_06955) tuf 1479026..1480210 (+) 1185 WP_000031783.1 elongation factor Tu -
  G9W35_RS07015 (G9W35_06960) bfd 1480393..1480587 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  G9W35_RS07020 (G9W35_06965) bfr 1480660..1481136 (+) 477 WP_000675515.1 bacterioferritin -
  G9W35_RS07025 (G9W35_06970) pilD 1481133..1481600 (-) 468 WP_000339836.1 A24 family peptidase Machinery gene
  G9W35_RS07030 (G9W35_06975) rpsJ 1481979..1482290 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  G9W35_RS07035 (G9W35_06980) rplC 1482323..1482952 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  G9W35_RS07040 (G9W35_06985) rplD 1482963..1483568 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  G9W35_RS07045 (G9W35_06990) rplW 1483565..1483867 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  G9W35_RS07050 (G9W35_06995) rplB 1483885..1484706 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  G9W35_RS07055 (G9W35_07000) rpsS 1484723..1485001 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  G9W35_RS07060 (G9W35_07005) rplV 1485016..1485348 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  G9W35_RS07065 (G9W35_07010) rpsC 1485366..1486067 (+) 702 WP_074500482.1 30S ribosomal protein S3 -
  G9W35_RS07070 (G9W35_07015) rplP 1486080..1486490 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=375434 G9W35_RS07025 WP_000339836.1 1481133..1481600(-) (pilD) [Escherichia coli strain UPEC-245U/190328]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=375434 G9W35_RS07025 WP_000339836.1 1481133..1481600(-) (pilD) [Escherichia coli strain UPEC-245U/190328]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361

Multiple sequence alignment