Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   G9W35_RS06320 Genome accession   NZ_CP049845
Coordinates   1334660..1335424 (-) Length   254 a.a.
NCBI ID   WP_074512622.1    Uniprot ID   -
Organism   Escherichia coli strain UPEC-245U/190328     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329660..1340424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9W35_RS06290 (G9W35_06240) - 1330294..1331652 (-) 1359 WP_021565455.1 PTS galactitol transporter subunit IIC -
  G9W35_RS06295 (G9W35_06245) - 1331729..1332010 (-) 282 WP_000084025.1 PTS sugar transporter subunit IIB -
  G9W35_RS06300 (G9W35_06250) - 1332007..1332480 (-) 474 WP_001161650.1 PTS sugar transporter subunit IIA -
  G9W35_RS06305 (G9W35_06255) - 1332505..1333251 (-) 747 WP_001308115.1 GntR family transcriptional regulator -
  G9W35_RS06310 (G9W35_06260) nikR 1333450..1333851 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  G9W35_RS06315 (G9W35_06265) nikE 1333857..1334663 (-) 807 WP_021565456.1 nickel import ATP-binding protein NikE -
  G9W35_RS06320 (G9W35_06270) amiE 1334660..1335424 (-) 765 WP_074512622.1 nickel import ATP-binding protein NikD Regulator
  G9W35_RS06325 (G9W35_06275) nikC 1335424..1336257 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  G9W35_RS06330 (G9W35_06280) nikB 1336254..1337198 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  G9W35_RS06335 (G9W35_06285) nikA 1337198..1338772 (-) 1575 WP_000953353.1 nickel ABC transporter substrate-binding protein -
  G9W35_RS06340 (G9W35_06290) acpT 1338883..1339470 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26876.45 Da        Isoelectric Point: 6.8311

>NTDB_id=375429 G9W35_RS06320 WP_074512622.1 1334660..1335424(-) (amiE) [Escherichia coli strain UPEC-245U/190328]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLARYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=375429 G9W35_RS06320 WP_074512622.1 1334660..1335424(-) (amiE) [Escherichia coli strain UPEC-245U/190328]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCGCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment