Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BSEL_RS12415 Genome accession   NC_014219
Coordinates   2662579..2664879 (-) Length   766 a.a.
NCBI ID   WP_013173367.1    Uniprot ID   D6XWW9
Organism   [Bacillus] selenitireducens MLS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2657579..2669879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSEL_RS12395 (Bsel_2439) - 2658466..2658768 (-) 303 WP_013173363.1 DUF1292 domain-containing protein -
  BSEL_RS12400 (Bsel_2440) ruvX 2658789..2659205 (-) 417 WP_013173364.1 Holliday junction resolvase RuvX -
  BSEL_RS12405 (Bsel_2441) - 2659202..2659483 (-) 282 WP_013173365.1 IreB family regulatory phosphoprotein -
  BSEL_RS12410 (Bsel_2442) alaS 2659593..2662226 (-) 2634 WP_013173366.1 alanine--tRNA ligase -
  BSEL_RS12415 (Bsel_2443) recD2 2662579..2664879 (-) 2301 WP_013173367.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BSEL_RS12420 (Bsel_2444) - 2664911..2665582 (-) 672 WP_013173368.1 tetratricopeptide repeat protein -
  BSEL_RS12425 (Bsel_2445) mnmA 2665588..2666703 (-) 1116 WP_013173369.1 tRNA 2-thiouridine(34) synthase MnmA -
  BSEL_RS12430 (Bsel_2446) - 2666709..2667878 (-) 1170 WP_013173370.1 cysteine desulfurase family protein -
  BSEL_RS12435 (Bsel_2447) cymR 2667907..2668326 (-) 420 WP_013173371.1 cysteine metabolism transcriptional regulator CymR -
  BSEL_RS12440 (Bsel_2448) - 2668310..2668933 (-) 624 WP_013173372.1 YitT family protein -

Sequence

Protein


Download         Length: 766 a.a.        Molecular weight: 85917.03 Da        Isoelectric Point: 4.6516

>NTDB_id=37493 BSEL_RS12415 WP_013173367.1 2662579..2664879(-) (recD2) [[Bacillus] selenitireducens MLS10]
MADEQNETKTFIQGELIAQVFHAPETLYTVAKIRVKKASDDIDEKEMTVVGPMKPPEKDMVYRFEGSLTEHPLYGRQLQF
DSCETVMPETGEGIVLYLSSDRFEGIGRKTAQSIVSVLGESAISKILENRKVLDDVPNMNEAKKEILVSQLKEDQGIEGI
LTKLYDFGFGVKMALKVYQAYQESALDIMEQNPYRLVEDIEGIGFQKADQIGRKQGLTVNHGDRLKAGLLFCLQEETFSN
GHTYIEATELLVLADQLLSAGVTEPIDESSLSQQLLELEEEDKIRYENGRCFVPSLYHAERGIVTHMDRLLNRMEQVDQF
PEAEIYKALGEVEEELGITYAESQREAVFTGLHSPVMILTGGPGTGKTTVIEGIVKVFGRLKGVSVDPAEYGKKDGPFPI
VMAAPTGRAAKRMTESTGLPASTIHRLLGYKGENEGYFEKDDDDPIDGELLIIDEVSMVDTWLMNQLLKATPTWMQVIFV
GDEDQLPSVGPGQVLEDLLASDAAPNVRLVDIFRQEEGSRIIDFSHQIKESRLPPEGIDTSNKDLRFFPCQTQGVQTIVR
QVCEGAVKKGYHARDIQVLAPMYKGEAGVDALNVMLQNLFNPKRERVREVQFGEVTYRVGDMVLQLINDPENNVFNGDRG
EIVSIIRAKETVEKVMKITISFNGEEVDYERNDLNMITHAYCCTIHKSQGSEFPIVVMPVVKSYWRMLRKKLIYTGATRA
KGYLILCGEWDALEKAVVTGEETLRRTTLKERLLSVVPAKEKEEGR

Nucleotide


Download         Length: 2301 bp        

>NTDB_id=37493 BSEL_RS12415 WP_013173367.1 2662579..2664879(-) (recD2) [[Bacillus] selenitireducens MLS10]
ATGGCTGACGAACAGAACGAAACAAAAACGTTCATACAGGGTGAACTGATAGCCCAGGTGTTTCATGCACCTGAAACGCT
CTATACCGTGGCGAAGATCCGGGTGAAAAAGGCGAGTGACGACATCGATGAAAAAGAGATGACGGTAGTCGGTCCCATGA
AACCGCCTGAAAAAGATATGGTTTACCGCTTTGAAGGCAGTCTGACGGAACATCCGCTTTACGGCAGGCAGCTTCAGTTT
GATTCCTGTGAAACGGTCATGCCGGAAACGGGCGAGGGAATTGTGCTGTATTTGTCGAGCGACCGTTTCGAAGGAATTGG
CCGCAAAACCGCCCAGTCCATCGTGAGTGTCCTCGGTGAGAGCGCCATATCGAAAATTCTTGAAAACCGTAAGGTACTCG
ATGACGTTCCGAACATGAACGAAGCCAAAAAAGAGATCCTCGTCAGTCAGCTCAAAGAAGATCAGGGGATCGAGGGTATT
TTGACAAAGCTGTATGATTTTGGATTTGGCGTGAAGATGGCGCTGAAGGTCTATCAGGCCTATCAGGAAAGTGCCCTTGA
TATCATGGAACAGAATCCCTATCGCCTTGTGGAGGACATCGAAGGCATCGGCTTTCAAAAAGCCGATCAGATTGGCCGTA
AGCAGGGACTGACCGTGAACCACGGGGACCGTTTAAAAGCAGGGCTTCTCTTTTGTCTTCAGGAAGAGACCTTCTCAAAC
GGTCATACATATATCGAGGCGACGGAGCTGCTTGTTCTTGCAGACCAGCTTCTTTCTGCCGGCGTGACGGAGCCCATTGA
TGAGAGCAGTCTCAGCCAACAGCTCCTTGAACTTGAAGAAGAAGACAAAATCCGCTATGAAAACGGACGCTGCTTCGTGC
CGTCGCTTTATCATGCGGAGCGGGGGATTGTCACCCATATGGACCGTCTGTTAAACCGGATGGAACAGGTGGACCAGTTT
CCGGAGGCGGAAATATACAAAGCCCTCGGCGAAGTGGAGGAAGAACTGGGCATCACCTATGCGGAGTCTCAGCGCGAAGC
CGTATTCACAGGTCTTCATTCACCAGTCATGATTCTGACAGGTGGACCCGGTACAGGGAAAACCACTGTCATTGAAGGAA
TTGTCAAAGTGTTTGGCCGGCTGAAAGGCGTCTCGGTGGATCCTGCCGAGTACGGGAAAAAAGATGGCCCGTTTCCGATT
GTCATGGCGGCACCGACAGGACGCGCTGCAAAGCGAATGACAGAATCCACAGGACTTCCGGCCTCCACGATCCACCGGCT
CCTCGGTTATAAAGGTGAAAACGAAGGGTATTTCGAAAAAGATGATGATGATCCCATTGACGGTGAGCTCCTGATCATTG
ATGAGGTGTCCATGGTGGATACGTGGCTGATGAATCAGCTCTTAAAAGCGACACCGACCTGGATGCAGGTTATATTTGTC
GGTGATGAGGATCAGCTTCCGAGCGTCGGACCGGGTCAGGTATTGGAGGACCTGCTGGCCTCGGATGCGGCGCCGAACGT
GCGGCTTGTCGATATCTTCCGACAGGAAGAAGGATCGAGAATCATCGATTTTTCCCATCAGATTAAAGAAAGCCGATTGC
CGCCGGAGGGAATCGATACGTCGAATAAAGACTTGCGGTTTTTCCCTTGTCAGACGCAAGGGGTGCAGACAATCGTCAGA
CAGGTTTGTGAAGGCGCAGTGAAAAAGGGCTATCACGCCAGGGATATACAGGTGCTCGCCCCGATGTATAAAGGGGAGGC
CGGTGTGGACGCATTAAACGTCATGCTACAGAATCTGTTTAACCCGAAGCGTGAACGCGTGCGTGAAGTGCAGTTTGGTG
AGGTGACCTACCGCGTCGGCGATATGGTCCTTCAACTGATCAATGATCCGGAAAATAACGTCTTTAACGGTGACCGGGGA
GAGATCGTGTCGATCATCAGGGCGAAAGAAACCGTTGAAAAAGTCATGAAAATCACGATTTCCTTTAACGGGGAGGAAGT
CGATTATGAACGGAATGATCTGAATATGATCACCCATGCGTATTGCTGTACGATTCATAAATCACAGGGCAGTGAGTTTC
CGATCGTCGTAATGCCCGTTGTGAAAAGCTATTGGCGGATGCTCAGAAAGAAGCTCATATACACAGGTGCAACGAGGGCC
AAAGGATACCTGATTCTTTGCGGAGAATGGGATGCTCTTGAGAAGGCGGTAGTGACAGGTGAAGAGACCCTCAGAAGAAC
GACATTGAAGGAGAGGCTTCTGTCAGTTGTACCGGCCAAAGAAAAGGAAGAGGGACGTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-244)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-651)

AAA domain (AAA_30)

(340-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D6XWW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.535

97.781

0.504

Multiple sequence alignment