Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BSEL_RS08905 Genome accession   NC_014219
Coordinates   1934685..1935461 (+) Length   258 a.a.
NCBI ID   WP_013172669.1    Uniprot ID   D6XTV9
Organism   [Bacillus] selenitireducens MLS10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1929685..1940461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSEL_RS08890 (Bsel_1734) xerC 1931769..1932680 (+) 912 WP_013172666.1 tyrosine recombinase XerC -
  BSEL_RS08895 (Bsel_1735) hslV 1932698..1933243 (+) 546 WP_013172667.1 ATP-dependent protease subunit HslV -
  BSEL_RS08900 (Bsel_1736) hslU 1933278..1934669 (+) 1392 WP_013172668.1 ATP-dependent protease ATPase subunit HslU -
  BSEL_RS08905 (Bsel_1737) codY 1934685..1935461 (+) 777 WP_013172669.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BSEL_RS08910 (Bsel_1738) flgB 1935737..1936141 (+) 405 WP_013172670.1 flagellar basal body rod protein FlgB -
  BSEL_RS08915 (Bsel_1739) flgC 1936148..1936576 (+) 429 WP_013172671.1 flagellar basal body rod protein FlgC -
  BSEL_RS08920 (Bsel_1740) fliE 1936578..1936889 (+) 312 WP_095522128.1 flagellar hook-basal body complex protein FliE -
  BSEL_RS08925 (Bsel_1741) fliF 1937055..1938641 (+) 1587 WP_013172673.1 flagellar basal-body MS-ring/collar protein FliF -
  BSEL_RS08930 (Bsel_1742) fliG 1938658..1939668 (+) 1011 WP_013172674.1 flagellar motor switch protein FliG -
  BSEL_RS08935 (Bsel_1743) fliH 1939661..1940458 (+) 798 WP_041581855.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 28962.12 Da        Isoelectric Point: 4.5503

>NTDB_id=37486 BSEL_RS08905 WP_013172669.1 1934685..1935461(+) (codY) [[Bacillus] selenitireducens MLS10]
MTLLEKTRKINELLQTSAGQSVNFKEMAATLRDVIESNVFIVSRRGKLLGFAIKQEIENERMKEMLEERKFPEVYTESLF
DIEDTSSNIPVESDFTAFPVENRDLFKNGLTTIVPIQGGGERLGTLILARLDDSFDDEDLVLAEYGSTVVGMEILHEKQE
EIEQEARSKAVVQMAISSLSYSELEAVDHIFKELDGMEGLLVASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLLELEKHKN

Nucleotide


Download         Length: 777 bp        

>NTDB_id=37486 BSEL_RS08905 WP_013172669.1 1934685..1935461(+) (codY) [[Bacillus] selenitireducens MLS10]
ATGACCTTATTAGAGAAAACAAGAAAAATCAATGAGTTGCTTCAGACGAGCGCCGGCCAATCGGTTAATTTTAAAGAAAT
GGCAGCGACACTGCGTGACGTTATTGAATCCAACGTTTTTATCGTAAGCCGCAGAGGAAAGCTGTTGGGTTTTGCTATTA
AACAGGAAATCGAAAATGAACGGATGAAAGAAATGCTTGAGGAACGGAAATTTCCTGAAGTGTATACGGAAAGCCTTTTT
GATATTGAAGATACATCATCCAATATTCCTGTGGAAAGTGATTTTACCGCCTTTCCTGTGGAGAATCGGGATTTGTTCAA
GAATGGTTTGACAACCATTGTGCCGATCCAGGGTGGTGGAGAACGTCTTGGTACACTGATTCTTGCGCGTCTGGACGACT
CGTTTGATGATGAAGACCTTGTTTTGGCGGAGTACGGATCGACGGTTGTCGGTATGGAAATTTTGCATGAAAAGCAGGAA
GAAATCGAACAGGAAGCCAGAAGCAAAGCGGTCGTGCAAATGGCCATCAGCTCTCTTTCCTACAGTGAACTCGAGGCTGT
CGATCATATTTTCAAAGAACTCGACGGGATGGAGGGCCTTTTGGTCGCGAGTAAAGTGGCGGACCGGGTCGGCATCACCC
GTTCGGTCATTGTCAATGCACTGAGAAAGCTTGAAAGTGCCGGTGTCATCGAATCAAGGTCTCTTGGAATGAAAGGCACT
TATATAAAAGTGCTAAACGACAAGTTTCTGTTAGAACTAGAGAAGCATAAAAATTGA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-256)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D6XTV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

77.907

100

0.779
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.79

96.124

0.469

Multiple sequence alignment