Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MS7_RS08760 Genome accession   NC_017351
Coordinates   1732732..1734006 (+) Length   424 a.a.
NCBI ID   WP_000102738.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus 11819-97     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1727732..1739006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS7_RS08730 (MS7_1637) mnmA 1727934..1729052 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  MS7_RS08735 (MS7_1638) - 1729053..1730195 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  MS7_RS08740 (MS7_1639) - 1730507..1731520 (+) 1014 WP_000985872.1 LLM class flavin-dependent oxidoreductase -
  MS7_RS08745 (MS7_1640) - 1731757..1731903 (-) 147 WP_000009238.1 SAS049 family protein -
  MS7_RS08750 (MS7_1641) - 1731943..1732125 (-) 183 WP_000752909.1 CsbD family protein -
  MS7_RS08755 (MS7_1642) - 1732225..1732647 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  MS7_RS08760 (MS7_1643) rarA 1732732..1734006 (+) 1275 WP_000102738.1 replication-associated recombination protein A Machinery gene
  MS7_RS08765 (MS7_1644) - 1734167..1734940 (-) 774 WP_000682642.1 tRNA threonylcarbamoyladenosine dehydratase -
  MS7_RS08770 - 1734940..1735068 (-) 129 WP_031864484.1 hypothetical protein -
  MS7_RS08775 (MS7_1645) aspS 1735401..1737167 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  MS7_RS08780 (MS7_1646) hisS 1737183..1738445 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47234.81 Da        Isoelectric Point: 8.3539

>NTDB_id=37469 MS7_RS08760 WP_000102738.1 1732732..1734006(+) (rarA) [Staphylococcus aureus subsp. aureus 11819-97]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMAYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=37469 MS7_RS08760 WP_000102738.1 1732732..1734006(+) (rarA) [Staphylococcus aureus subsp. aureus 11819-97]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCTTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGGCCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGTCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAC
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.286

99.057

0.686

Multiple sequence alignment