Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BSEL_RS00020 Genome accession   NC_014219
Coordinates   3921..5042 (+) Length   373 a.a.
NCBI ID   WP_013170986.1    Uniprot ID   -
Organism   [Bacillus] selenitireducens MLS10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..10042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSEL_RS00005 (Bsel_0001) dnaA 654..2009 (+) 1356 WP_013170983.1 chromosomal replication initiator protein DnaA -
  BSEL_RS00010 (Bsel_0002) dnaN 2218..3360 (+) 1143 WP_013170984.1 DNA polymerase III subunit beta -
  BSEL_RS00015 (Bsel_0003) yaaA 3670..3897 (+) 228 WP_013170985.1 S4 domain-containing protein YaaA -
  BSEL_RS00020 (Bsel_0004) recF 3921..5042 (+) 1122 WP_013170986.1 DNA replication/repair protein RecF Machinery gene
  BSEL_RS00025 (Bsel_0005) remB 5044..5343 (+) 300 WP_408643024.1 extracellular matrix regulator RemB -
  BSEL_RS00030 (Bsel_0006) gyrB 5429..7342 (+) 1914 WP_013170988.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BSEL_RS00035 (Bsel_0007) gyrA 7401..9908 (+) 2508 WP_013170989.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 43184.30 Da        Isoelectric Point: 6.7849

>NTDB_id=37469 BSEL_RS00020 WP_013170986.1 3921..5042(+) (recF) [[Bacillus] selenitireducens MLS10]
MHINELKLTDYRNYTKLHLTFENRVNVFLGENAQGKTNVMEAIYVLAMARSHRTAKDRELIRWDQPFARVEGAVTNRNGA
MKLEMIFSGRGKKVKLNALERKRLSDYIGACTIVMFAPEDLALVKGSPQIRRRFLDMEMGQIFTIYLYYLSQYYKLLKQR
NTWLKQLQQKSSSFDEGMWHVLTEQLVEAGAEVIQRRFSFLNKLEAWATPIHSAISRDKETLTLHYESTVKADDEMSVDV
IKQVFFEQFQQVMEQEIRRGTTIIGPHRDDVAFFVNDRNVQTYGSQGQQRTAALSVKLAEIELIHEKTGEYPILLLDDVL
SELDDHRQTHLLNSIQGKVQTFVTTTSVEGIHHEMLEKASTYLVNDGVIEQQE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=37469 BSEL_RS00020 WP_013170986.1 3921..5042(+) (recF) [[Bacillus] selenitireducens MLS10]
GTGCATATTAACGAGTTAAAGCTGACGGATTACAGGAATTATACAAAGCTGCATCTGACGTTTGAAAACCGTGTCAACGT
CTTTCTCGGCGAAAATGCGCAAGGCAAAACGAATGTCATGGAAGCCATTTATGTGCTTGCCATGGCCCGCTCACACCGTA
CAGCGAAAGATCGTGAACTGATCCGCTGGGATCAGCCGTTTGCGAGGGTGGAAGGAGCCGTCACAAACCGAAACGGTGCC
ATGAAACTGGAGATGATCTTCTCCGGACGAGGCAAAAAAGTGAAGCTGAATGCTCTCGAACGAAAGCGTCTCTCTGACTA
TATCGGTGCCTGCACCATTGTCATGTTTGCTCCAGAAGATTTGGCGCTTGTCAAAGGGAGTCCGCAGATCCGGCGACGCT
TTCTTGATATGGAAATGGGACAGATATTTACAATCTATCTGTATTATCTGTCGCAGTACTATAAACTGTTAAAGCAGCGG
AATACCTGGCTTAAGCAGCTGCAGCAGAAGTCATCATCTTTTGATGAGGGCATGTGGCATGTGCTGACAGAACAGCTTGT
TGAAGCAGGGGCAGAGGTGATCCAGAGGCGCTTCTCATTTTTGAACAAGCTTGAAGCCTGGGCGACACCGATTCACAGTG
CGATCAGCCGGGATAAAGAAACGCTTACGCTTCACTATGAATCCACAGTCAAAGCCGATGATGAGATGAGCGTGGATGTG
ATCAAACAGGTCTTTTTTGAGCAGTTTCAACAGGTGATGGAGCAGGAAATCAGACGGGGGACCACGATCATAGGGCCCCA
CAGGGATGACGTGGCGTTTTTTGTGAATGACCGCAATGTGCAGACCTACGGCTCACAGGGGCAGCAAAGAACAGCCGCCC
TCTCCGTGAAGCTTGCGGAGATTGAGCTGATTCACGAGAAGACCGGCGAGTATCCGATTCTTCTCCTCGATGATGTGCTC
TCTGAACTCGACGATCACAGACAGACGCATCTGTTAAACAGCATTCAGGGAAAGGTACAGACGTTCGTTACGACGACCAG
CGTAGAGGGCATCCACCATGAAATGCTTGAGAAAGCCTCGACGTATTTGGTGAACGACGGCGTGATTGAACAACAGGAAT
GA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

59.35

98.928

0.587

Multiple sequence alignment