Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   M301_RS01390 Genome accession   NC_014207
Coordinates   307760..309169 (-) Length   469 a.a.
NCBI ID   WP_013146971.1    Uniprot ID   D7DLH0
Organism   Methylotenera versatilis 301     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 302760..314169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M301_RS01375 (M301_0264) - 304872..306017 (-) 1146 WP_013146968.1 efflux RND transporter periplasmic adaptor subunit -
  M301_RS01380 (M301_0265) ampD 306051..306596 (-) 546 WP_013146969.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  M301_RS01385 (M301_0266) - 306704..307705 (+) 1002 WP_013146970.1 sodium:calcium antiporter -
  M301_RS01390 (M301_0267) pilR 307760..309169 (-) 1410 WP_013146971.1 sigma-54-dependent transcriptional regulator Regulator
  M301_RS01395 (M301_0268) - 309176..310792 (-) 1617 WP_049769993.1 ATP-binding protein -
  M301_RS01400 (M301_0269) - 310845..311078 (-) 234 WP_013146973.1 PP0621 family protein -
  M301_RS01405 (M301_0270) - 311186..311812 (+) 627 WP_420794845.1 RNA polymerase sigma factor -
  M301_RS01410 (M301_0271) - 311823..312266 (+) 444 WP_013146975.1 DUF3619 family protein -
  M301_RS01415 (M301_0272) - 312242..312703 (+) 462 WP_013146976.1 DUF3106 domain-containing protein -
  M301_RS01420 (M301_0273) - 312725..313192 (+) 468 WP_013146977.1 RDD family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 51462.01 Da        Isoelectric Point: 5.0618

>NTDB_id=37379 M301_RS01390 WP_013146971.1 307760..309169(-) (pilR) [Methylotenera versatilis 301]
MTKKLTCLIVDDETDIRELLTMTLERMDIDTYSASNIQEAKSLLTQRQYALCLTDMQMPGGTGLDLVNYINEFHPGLPVA
VITAHASAENAVSALKAGAFDYLSKPISLKQLRPVIEFALKLTSQASTSKGDALEMVGDSEPMVHVRAMITKLARSQAPV
YISGESGSGKELAAKLIHKNSSRGDGAFIAVNCGAIPENLMESEFFGYKKGSFTGASQDKEGMFQAANGGTLFLDEVADL
PLAMQVKLLRAIQEKKVRMVGGTNEEAVDVRIISATHKNLAEMMDAGLFRQDLYYRLNVIQLKMPSLRDRPTDIPLLANL
LLAKLCAYQKISMPELDSDAQAYISKMQFPGNVRELENMLERALAMSDGKIITIEDLSYESSYGATSSGLNTQKNSTFNG
EKPLDLNLPDYLEDVEKKAIVKALEKTNNNKTAAAKLLGVSFRTLRYRLSKLGLAKESDLDPDFENDDA

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=37379 M301_RS01390 WP_013146971.1 307760..309169(-) (pilR) [Methylotenera versatilis 301]
ATGACAAAAAAACTGACCTGCTTAATCGTTGACGACGAAACTGATATCCGTGAATTACTCACAATGACCCTAGAGCGCAT
GGATATTGATACTTATAGTGCGAGTAATATTCAAGAAGCCAAATCTTTACTCACACAACGTCAATACGCACTGTGCTTAA
CAGACATGCAAATGCCGGGCGGGACTGGGCTGGATTTAGTCAATTACATCAATGAATTTCACCCAGGCTTACCAGTTGCA
GTCATCACCGCCCATGCCAGCGCTGAAAATGCAGTATCTGCACTTAAAGCTGGTGCTTTTGATTATCTAAGTAAGCCTAT
TTCACTCAAGCAATTACGCCCAGTGATCGAGTTCGCACTCAAGCTCACATCGCAAGCCAGTACCAGCAAAGGCGATGCAC
TTGAGATGGTCGGTGATTCTGAGCCTATGGTGCATGTACGTGCAATGATCACCAAGCTTGCGCGTAGCCAAGCGCCGGTT
TATATTAGCGGCGAGTCTGGCAGCGGTAAAGAACTTGCAGCAAAACTCATCCACAAGAACAGCTCTAGGGGTGACGGTGC
TTTTATTGCGGTGAACTGCGGCGCGATTCCAGAAAACTTGATGGAAAGCGAATTTTTCGGCTACAAAAAAGGTTCTTTTA
CAGGCGCAAGCCAAGATAAAGAAGGTATGTTTCAAGCGGCGAATGGCGGGACTTTATTTTTAGATGAAGTCGCTGACTTA
CCGCTGGCGATGCAGGTTAAACTCCTGCGTGCTATTCAAGAGAAAAAAGTGCGTATGGTAGGCGGCACCAATGAAGAGGC
CGTGGATGTACGCATTATCAGCGCCACTCATAAAAACCTAGCTGAAATGATGGATGCAGGGCTGTTCAGGCAGGATTTGT
ATTACCGCCTAAACGTTATTCAACTTAAAATGCCTTCTTTGCGCGACCGTCCAACTGATATTCCCTTACTAGCAAATTTA
TTACTCGCAAAACTATGCGCCTACCAAAAAATCAGCATGCCTGAATTAGATAGCGACGCGCAGGCCTATATCTCAAAAAT
GCAGTTTCCTGGCAATGTGCGCGAGTTAGAGAACATGCTGGAGCGAGCTTTGGCCATGAGTGATGGCAAAATAATTACCA
TTGAAGATTTAAGCTATGAGAGCAGCTATGGCGCTACGAGCTCAGGATTAAACACGCAGAAGAACTCAACGTTTAATGGC
GAAAAACCATTAGACCTCAATTTACCTGATTACCTTGAAGACGTTGAGAAAAAAGCGATCGTTAAGGCATTAGAGAAAAC
TAATAACAACAAGACAGCGGCGGCGAAGTTGCTTGGCGTAAGCTTTCGCACTTTGCGTTACAGGTTATCTAAGCTGGGCT
TGGCTAAAGAAAGTGATTTAGACCCAGACTTTGAAAACGATGATGCCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(412-452)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D7DLH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.366

95.522

0.548
  pilR Acinetobacter baumannii strain A118

46.436

98.721

0.458

Multiple sequence alignment