Detailed information NTG0373487

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: FO457_RS05670
• Genome accession: NZ_CP041725
• Coordinates: 1166910..1169297 (+)
• Length: 795 a.a.
• NCBI ID: WP_002478091.1
• Uniprot ID: -
• Organism: Staphylococcus lugdunensis strain SL117
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1161910..1174297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FO457_RS05645 (FO457_05645)	-	1162268..1162408 (+)	141	WP_002458939.1	SAS049 family protein	-
FO457_RS05650 (FO457_05650)	-	1162610..1163611 (-)	1002	WP_002478089.1	LLM class flavin-dependent oxidoreductase	-
FO457_RS05655 (FO457_05655)	-	1163841..1164983 (+)	1143	WP_150907549.1	cysteine desulfurase family protein	-
FO457_RS05660 (FO457_05660)	mnmA	1164983..1166095 (+)	1113	WP_002458942.1	tRNA 2-thiouridine(34) synthase MnmA	-
FO457_RS05665 (FO457_05665)	-	1166237..1166908 (+)	672	WP_002478090.1	tetratricopeptide repeat protein	-
FO457_RS05670 (FO457_05670)	recD2	1166910..1169297 (+)	2388	WP_002478091.1	ATP-dependent RecD-like DNA helicase	Machinery gene
FO457_RS05675 (FO457_05675)	alaS	1169565..1172195 (+)	2631	WP_002478092.1	alanine--tRNA ligase	-
FO457_RS05680 (FO457_05680)	-	1172261..1172521 (+)	261	WP_002458946.1	IreB family regulatory phosphoprotein	-
FO457_RS05685 (FO457_05685)	ruvX	1172525..1172953 (+)	429	WP_002458947.1	Holliday junction resolvase RuvX	-
FO457_RS05690 (FO457_05690)	-	1172966..1173274 (+)	309	WP_002458948.1	DUF1292 domain-containing protein	-
FO457_RS05695 (FO457_05695)	-	1173637..1174278 (+)	642	WP_002478093.1	O-methyltransferase	-

Sequence

Protein

• Length: 795 a.a.
• Molecular weight: 89613.32 Da
• Isoelectric Point: 4.8263

>NTDB_id=373487 FO457_RS05670 WP_002478091.1 1166910..1169297(+) (recD2) [Staphylococcus lugdunensis strain SL117]
MDNPTLFEPTMLKGTVEVILFQNQDNFYTVLKVDTIESNESFDTMPTVVGFFPNIVEGDVYTFKGQVVAHPKYGKQLKAD
TFEKELPQTKDAIITYLSSDLFKGIGKKTAQNIVNTLGENAINDILAHPDILTKVSNLSKKKQEQIAQQIAANQESEKIM
IHLHDLGFGPKLSMAIYQFYQSETINVVDNNPYKLVYDIKGIGFNKADTLARNIGIDFNDPERLKAGILFTLEEECIKQG
HTYLPAETILKSAQTMLSTQGDEIIEIHQLEEMLQILMEEDKLILDQQKIAIPSLYYSELKSVQNLYRILTHTHKLNELE
QSDLQLHIGEIEDSNEVHYAASQKEALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYADYTDDDFPVVLA
APTGRASKRLQEATGLEAMTIHRLIGWNQDTQPEDILDNEIKAKLIIIDEMSMVDTWLFHQFLNAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIQSKKIPRVNLTEVYRQQDGSSIIELAHHMKQNESIDITKRYHDRSFINCSAEQIPDVVKKVVSSAV
SKGYDMSDIQVLAPMYKGSAGIKRLNQILQTILNPKEPDAREIEFGDAAFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFW
AKENALNKDVIIVDFDGNEITFTRQDLIELTHAYCTSIHKSQGSEFPIVIMPVVKQYFRMLQKPILYTGLTRAKQSLVLL
GDPQAFDIGLKTNGQVRMTQLYDLLEAYFGHETQNSTDDNIIAKHKKDTLSAATIYQIDPMINMNQMTPYDFIER

Nucleotide

• Length: 2388 bp

>NTDB_id=373487 FO457_RS05670 WP_002478091.1 1166910..1169297(+) (recD2) [Staphylococcus lugdunensis strain SL117]
ATGGATAACCCTACACTATTTGAACCAACGATGTTAAAGGGCACCGTCGAAGTTATTTTGTTCCAAAATCAAGATAATTT
CTATACTGTACTTAAAGTTGATACCATTGAATCTAATGAATCGTTCGATACGATGCCAACGGTTGTAGGGTTTTTCCCAA
ATATTGTTGAAGGCGACGTATACACCTTTAAAGGACAGGTTGTTGCGCATCCAAAATATGGCAAACAACTAAAAGCTGAT
ACATTTGAAAAAGAATTACCACAAACGAAAGATGCTATTATTACCTACTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAGACAGCACAAAATATTGTTAATACTTTGGGAGAAAATGCAATAAATGATATTTTAGCTCATCCAGACATATTAACAA
AAGTTTCAAATCTTTCTAAAAAGAAACAAGAGCAAATTGCACAACAAATAGCAGCCAATCAAGAATCAGAAAAAATCATG
ATACACTTACATGATTTAGGATTTGGCCCTAAACTATCAATGGCAATCTATCAGTTTTATCAAAGTGAAACAATAAACGT
CGTTGATAATAACCCGTATAAACTTGTATATGATATTAAAGGAATTGGATTTAATAAAGCTGATACATTAGCACGTAATA
TCGGCATCGACTTTAATGACCCAGAACGATTAAAAGCTGGCATATTATTCACACTAGAGGAAGAATGTATTAAACAAGGG
CATACTTATTTACCTGCTGAAACAATTCTTAAATCAGCACAAACAATGTTAAGTACGCAAGGGGATGAAATAATTGAAAT
ACATCAACTTGAAGAAATGTTGCAAATTTTAATGGAAGAAGATAAGTTGATTCTTGATCAACAAAAAATTGCCATCCCCA
GTCTTTACTACTCAGAATTAAAAAGTGTACAAAACTTATATCGTATATTAACTCATACCCATAAATTAAATGAACTTGAG
CAATCTGATTTACAGTTGCATATTGGAGAGATAGAAGATAGCAATGAAGTACATTATGCTGCATCACAAAAAGAGGCTTT
ACAAACAGCTATAAACTCAAAAATCATGTTATTAACTGGCGGACCTGGAACTGGTAAGACAACTGTCATTAAAGGTATTG
TAGAGTTATACGCTGAAATTCATGGACTTTCTTTAGATTATGCGGATTACACTGATGATGATTTCCCAGTAGTATTAGCA
GCTCCTACAGGCAGAGCATCGAAACGTTTACAAGAAGCTACTGGCTTAGAGGCAATGACCATCCACCGACTTATAGGATG
GAATCAAGATACACAACCAGAAGACATTTTAGATAATGAAATTAAAGCAAAATTAATTATCATAGATGAAATGTCTATGG
TTGACACTTGGTTATTTCATCAGTTTTTAAATGCGGTACCTTTAGATGCCCAAATTGTATTTGTTGGAGATGAAGACCAA
CTGCCTTCTGTTGGGCCTGGACAAGTATTTAAGGACTTAATCCAGTCTAAAAAAATACCACGTGTCAATTTAACTGAAGT
CTACCGACAACAAGATGGTTCAAGTATTATTGAATTAGCTCACCACATGAAACAAAACGAATCCATAGATATTACAAAAC
GTTATCATGATAGAAGCTTCATTAATTGTAGTGCAGAACAAATTCCTGACGTTGTTAAGAAAGTAGTATCCAGTGCAGTT
AGTAAAGGATATGACATGAGTGATATTCAAGTACTTGCTCCCATGTATAAAGGAAGTGCAGGTATTAAACGTTTAAATCA
AATTCTGCAAACAATTTTAAATCCTAAAGAACCAGACGCCCGTGAAATTGAATTTGGTGATGCTGCATTCCGCAAAGGCG
ATAAAGTATTACAGTTAGTAAATCGTCCTAATGACAATATTTTTAATGGAGATATTGGTATTATTGTTGGCATTTTTTGG
GCAAAAGAAAATGCTTTAAATAAAGATGTTATTATCGTCGATTTTGACGGTAATGAAATTACATTTACACGACAAGACTT
AATTGAATTAACGCATGCATATTGCACTTCGATTCACAAGTCCCAAGGTTCAGAATTCCCAATCGTTATTATGCCCGTAG
TGAAACAATATTTTAGAATGTTACAAAAGCCTATTCTTTATACTGGTTTGACTAGAGCTAAACAATCTTTAGTATTACTA
GGGGATCCACAAGCCTTTGACATTGGTCTTAAAACAAATGGTCAAGTTAGAATGACGCAATTATATGATTTATTAGAAGC
ATATTTTGGACACGAAACGCAGAATTCTACTGATGATAATATCATAGCTAAACATAAAAAAGATACATTATCAGCAGCGA
CAATTTATCAAATAGATCCGATGATTAACATGAATCAAATGACGCCATATGACTTTATTGAACGTTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• AAA domain (AAA_30) (339-544)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	50.063	100	0.503