Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   GC56T3_RS05030 Genome accession   NC_014206
Coordinates   993513..995873 (+) Length   786 a.a.
NCBI ID   WP_013144657.1    Uniprot ID   -
Organism   Geobacillus sp. C56-T3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 988513..1000873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC56T3_RS05005 (GC56T3_0925) - 989780..990013 (+) 234 WP_041468257.1 hypothetical protein -
  GC56T3_RS05010 (GC56T3_0926) cymR 990025..990441 (+) 417 WP_011232042.1 cysteine metabolism transcriptional regulator CymR -
  GC56T3_RS05015 (GC56T3_0927) - 990469..991611 (+) 1143 WP_013144654.1 cysteine desulfurase family protein -
  GC56T3_RS05020 (GC56T3_0928) mnmA 991627..992742 (+) 1116 WP_013144655.1 tRNA 2-thiouridine(34) synthase MnmA -
  GC56T3_RS05025 (GC56T3_0929) - 992831..993493 (+) 663 WP_013144656.1 tetratricopeptide repeat protein -
  GC56T3_RS05030 (GC56T3_0930) recD2 993513..995873 (+) 2361 WP_013144657.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GC56T3_RS05035 (GC56T3_0931) - 995899..996372 (+) 474 WP_011232037.1 PRC-barrel domain-containing protein -
  GC56T3_RS05040 (GC56T3_0932) - 996388..996579 (+) 192 WP_008881018.1 hypothetical protein -
  GC56T3_RS18375 (GC56T3_0933) - 996591..996725 (+) 135 WP_013144658.1 YrzQ family protein -
  GC56T3_RS05045 (GC56T3_0934) - 996846..997907 (+) 1062 WP_013144659.1 AI-2E family transporter -
  GC56T3_RS05050 (GC56T3_0936) alaS 998226..1000862 (+) 2637 WP_013144661.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 86665.38 Da        Isoelectric Point: 5.0942

>NTDB_id=37342 GC56T3_RS05030 WP_013144657.1 993513..995873(+) (recD2) [Geobacillus sp. C56-T3]
MQEQQILALDGRTFIKGVCLAVIFHNEETLYTVVRVRVEETNEAPVEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAASQFRKQLPNTKEGVIHYLSSGLFKGIGKKTAAAIVETLGENAIAAILRDPKTLERVPKLTKKKAKQLYDALRAHEGL
EQTMIALAQLGFGPQLAMKIYQAYGEEAIDIIHENPYQLVEDIEGIGFSRADEIGRQLGISGSHPARLRAASLFILEQAC
LQEGHVYLREEELMERIGELLDGRLSGAVDGRAISQTLLMLSEEGKLIAEQGRYYLPSLYFAEKGIVSNIKRLLGQAPPS
AFAESEFLLALGALEERLGMQYAPQQREAIQQALSSPLFILTGGPGTGKTTVIKGIVELFAALNGLSLDPADYKQGEPFP
VLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSRDENEPISGKLLVIDEMSMVDTWLANQLLKAVPNDMQVIFVG
DEDQLPSVGPGQVLKDLLSSGVIPFARLTEVYRQAEGSSIIELAHKMKRGVVPDDLTAPKADRSFIRCRAGQVVDVVRQI
ADNARKKGFSVKDIQVLAPMYRGPAGIDQLNKALQELFNPPAEGKRELSVGEVVYRVGDKVLQLVNQPEDNVFNGDIGEI
VAIFYAKENIEKQDLLVVSFDGIEVTYTRQDLGQITHAYCCSVHKAQGSEFPIVILPVVKNYYRMLKRNLLYTAVTRSKQ
FLVLCGEEEAFRFGVAKQSDGARQTALAEKLAGAAAPFVEVELPFEEANMGMENVTPYDFMGDEPS

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=37342 GC56T3_RS05030 WP_013144657.1 993513..995873(+) (recD2) [Geobacillus sp. C56-T3]
TTGCAAGAGCAACAAATCCTCGCCCTTGACGGACGCACGTTCATTAAAGGAGTGTGCTTGGCGGTCATTTTTCATAATGA
GGAAACATTGTACACGGTCGTCCGTGTGCGCGTTGAGGAAACGAACGAAGCGCCCGTTGAGGAGGAAGTCGTCGTCACCG
GCTATTTTCCGCGTTTAAACGAAGGGGACGTCTACATCTTTTACGGACAATTCCGCCAACATCCGCGTTTTGGCCGCCAA
TATGCGGCTAGTCAGTTCCGCAAACAGCTTCCGAACACGAAAGAAGGAGTCATTCATTATTTATCGAGCGGTTTGTTCAA
AGGAATCGGCAAAAAAACGGCTGCGGCGATTGTCGAGACGCTCGGCGAAAACGCGATTGCGGCCATTTTGCGCGACCCCA
AGACGCTAGAGCGTGTGCCGAAGCTGACGAAAAAAAAGGCGAAGCAGCTGTACGATGCGCTTCGCGCCCACGAAGGGCTT
GAGCAAACGATGATCGCCCTCGCCCAGCTCGGTTTTGGCCCGCAGCTGGCCATGAAAATTTACCAAGCGTATGGCGAAGA
AGCGATTGACATCATCCACGAGAACCCGTACCAGCTTGTTGAGGATATCGAAGGGATCGGCTTTAGCCGCGCTGATGAAA
TCGGGCGCCAGCTCGGCATTTCCGGCAGCCATCCGGCCCGGCTGCGCGCCGCCTCGTTGTTTATTCTTGAACAGGCGTGC
TTGCAGGAAGGGCACGTTTATTTGCGCGAGGAAGAGTTGATGGAGCGCATCGGGGAGCTGCTTGACGGAAGGCTGAGCGG
TGCGGTGGATGGACGAGCGATCAGCCAAACGCTTCTGATGTTAAGCGAGGAAGGAAAGCTGATCGCCGAGCAAGGGCGCT
ATTATCTCCCTTCCCTTTATTTCGCTGAGAAAGGGATCGTCTCCAACATTAAGCGGCTGCTCGGGCAGGCGCCGCCGTCG
GCGTTTGCCGAGTCGGAGTTTTTGCTGGCGCTTGGGGCGCTTGAGGAACGGCTTGGCATGCAATATGCCCCCCAGCAAAG
GGAAGCGATCCAACAAGCGCTTTCTTCGCCGCTGTTTATTTTGACCGGCGGTCCGGGAACGGGGAAAACGACGGTCATCA
AAGGCATCGTCGAGCTGTTTGCCGCCCTAAACGGCCTGTCTCTTGACCCGGCTGACTACAAACAAGGCGAGCCGTTTCCG
GTGCTGCTGGCCGCACCGACCGGCCGAGCGGCGAAGCGGATGAGCGAGGCGACCGGGCTGCCGGCGGCGACGATCCACCG
CTTGCTCGGCTGGAATGGGGCGGAAGGGTTCAGCCGTGACGAGAACGAACCGATTTCCGGCAAGCTGCTTGTCATCGATG
AGATGTCGATGGTCGACACGTGGCTCGCCAACCAGCTGTTAAAAGCCGTGCCAAACGACATGCAAGTCATTTTCGTCGGC
GATGAGGATCAATTGCCATCCGTCGGGCCAGGGCAAGTGCTGAAAGACTTGCTCTCTTCAGGCGTTATTCCGTTCGCTCG
GTTGACCGAGGTGTATCGCCAGGCGGAAGGATCATCGATCATCGAGCTTGCTCATAAGATGAAGCGCGGCGTCGTGCCGG
ACGATTTGACCGCTCCGAAGGCAGACCGTTCCTTCATCCGTTGCCGTGCGGGCCAGGTCGTCGATGTCGTGCGGCAAATC
GCGGACAACGCGCGCAAAAAAGGGTTTTCCGTCAAAGATATTCAAGTGCTCGCCCCGATGTACCGTGGTCCAGCGGGCAT
TGACCAATTGAACAAGGCGCTTCAAGAGCTGTTCAACCCGCCGGCTGAGGGGAAGCGGGAGCTGTCGGTCGGTGAGGTCG
TCTACCGCGTCGGCGATAAGGTGCTGCAGCTCGTCAATCAACCGGAAGACAATGTGTTTAACGGCGACATCGGCGAAATC
GTTGCCATTTTTTACGCCAAAGAAAATATCGAAAAGCAAGACTTGCTCGTCGTCTCGTTTGATGGCATTGAAGTGACGTA
CACACGGCAAGATTTAGGACAAATCACCCATGCGTACTGCTGTTCGGTTCATAAGGCGCAAGGAAGCGAGTTTCCAATCG
TCATTTTGCCCGTCGTCAAAAACTATTACCGGATGTTGAAACGGAATTTGTTGTATACTGCGGTGACAAGAAGCAAGCAG
TTTCTCGTTTTATGCGGGGAAGAGGAAGCGTTTCGATTCGGCGTCGCAAAACAAAGCGACGGAGCGCGCCAGACGGCGCT
CGCTGAGAAGCTGGCGGGGGCGGCGGCGCCGTTTGTCGAGGTCGAACTGCCGTTTGAAGAGGCGAACATGGGGATGGAAA
ACGTTACGCCGTATGACTTTATGGGCGATGAGCCAAGCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(590-660)

Helix-hairpin-helix domain (HHH_5)

(107-155)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

59.722

100

0.602

Multiple sequence alignment