Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GC56T3_RS04930 Genome accession   NC_014206
Coordinates   969612..971978 (+) Length   788 a.a.
NCBI ID   WP_013144640.1    Uniprot ID   -
Organism   Geobacillus sp. C56-T3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 964612..976978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC56T3_RS04915 (GC56T3_0908) - 965855..966142 (+) 288 WP_013144637.1 post-transcriptional regulator -
  GC56T3_RS04920 (GC56T3_0909) secDF 966256..968508 (+) 2253 WP_013144638.1 protein translocase subunit SecDF -
  GC56T3_RS04925 (GC56T3_0910) - 968646..969554 (+) 909 WP_013144639.1 cation diffusion facilitator family transporter -
  GC56T3_RS04930 (GC56T3_0911) recJ 969612..971978 (+) 2367 WP_013144640.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GC56T3_RS04935 (GC56T3_0912) - 971969..972481 (+) 513 WP_013144641.1 adenine phosphoribosyltransferase -
  GC56T3_RS04940 (GC56T3_0913) - 972630..974828 (+) 2199 WP_013144642.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  GC56T3_RS04945 (GC56T3_0914) dtd 974852..975310 (+) 459 WP_013144643.1 D-aminoacyl-tRNA deacylase -
  GC56T3_RS19575 (GC56T3_0915) - 975394..975567 (+) 174 WP_013144644.1 hypothetical protein -
  GC56T3_RS04955 (GC56T3_0916) ahpC 975910..976473 (+) 564 WP_013144645.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 86763.18 Da        Isoelectric Point: 6.0643

>NTDB_id=37341 GC56T3_RS04930 WP_013144640.1 969612..971978(+) (recJ) [Geobacillus sp. C56-T3]
MLKAKTRWEVERLDEQTVRRLAEEAGVTPLLARLLVRRGVRTASEAAAFLNPLRQPFHDPFLLDGMERAIQRLKRAIDAG
ERVLVYGDYDADGVCSTSVMVSALKEAGASVEFYIPNRFTEGYGPNMAAFRSAKERGVSVIVTVDNGIAAVKEIAAANEW
GLDVIVTDHHEPGPVLPEAHAIIHPKQPGSTYPFRDLAGVGVAFKVAHALLGRVPRHLLDLVAIGTIADLVPLVGENRLF
VAHGLEALRATERIGLRALFRQCRINAAAINEQTVGFVIAPRLNAAGRLGGADPAVALLMTDDENEAVQLAAEMDELNRE
RQQLVAQIAEEAADMVRRQFPPEEHRVLVVAGEGWNAGVVGIVASKLVEQFYRPAVVLSIDQEKGIAKGSARSIHGFDLF
ASLSQCRDLLPHFGGHPMAAGMTLALDDVEELRQRLNAIAAETLSEDDFTPPTFIDASCSIAELTLDAARGLERFAPFGV
GNPRPLVLIEGASVETMRRVGANGAHMKAVFSQDGAAIDAIGFGLGPLCEEIAPDARISAVGELSVNEWNGFAKPQLSLC
DLAVSDCQLFDVRGCRDVRPLLERLPKEKRLVVSFRCKTGQRPDVAPFRGELHCVPTEEEAGALSIDDRYVVLLDVPPRL
ALLSALLGSGRPARIYAVFAQPEAQFFRTFPTREHFKWFYAFLHQHRSFPLAKRGGELARARGWTEETVHFMAKVFLELD
FISEQNGVISLVHQPAKRDLHESPTYRRRRDELEAEHQLVYSTYEQLKRCLAEMTRSQTHEEANVSWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=37341 GC56T3_RS04930 WP_013144640.1 969612..971978(+) (recJ) [Geobacillus sp. C56-T3]
ATGTTGAAAGCGAAAACGCGTTGGGAGGTGGAGCGCCTCGATGAGCAGACGGTGAGGCGGCTCGCTGAGGAAGCCGGCGT
CACGCCCTTATTGGCGAGGCTTCTCGTCCGCCGCGGGGTGCGGACGGCCTCGGAGGCGGCAGCGTTTCTCAATCCGCTTC
GCCAACCGTTTCATGATCCGTTTTTGCTTGACGGGATGGAGCGAGCGATTCAGCGTCTAAAGCGGGCGATTGACGCGGGT
GAACGCGTGTTGGTATACGGCGATTACGATGCCGATGGCGTTTGCAGCACGTCGGTGATGGTGAGTGCTCTCAAGGAGGC
GGGGGCGTCGGTCGAGTTCTACATTCCGAACCGATTTACGGAAGGATACGGGCCGAACATGGCGGCGTTTCGCTCCGCAA
AAGAGCGCGGCGTTTCCGTCATTGTGACCGTCGACAATGGGATTGCGGCGGTCAAGGAAATTGCGGCCGCCAACGAGTGG
GGGTTGGATGTCATCGTAACGGATCACCACGAGCCAGGTCCGGTGTTGCCGGAGGCGCATGCGATCATTCATCCGAAGCA
GCCGGGAAGTACATATCCGTTTCGCGATTTAGCCGGCGTCGGCGTTGCGTTTAAGGTAGCCCATGCCTTGCTTGGGCGGG
TGCCGCGCCATTTGCTTGATTTGGTCGCGATCGGCACGATCGCTGATTTGGTTCCGCTTGTTGGGGAAAACCGCCTCTTT
GTTGCACACGGGCTTGAAGCGTTGCGAGCGACGGAGCGCATCGGGCTGCGCGCTCTTTTTCGGCAATGCCGCATTAATGC
GGCGGCCATCAACGAACAGACGGTCGGATTTGTCATCGCTCCGCGCTTGAACGCGGCGGGGCGCCTCGGCGGCGCCGATC
CGGCAGTGGCGCTCTTAATGACGGACGATGAGAACGAAGCGGTGCAGCTGGCGGCGGAGATGGACGAGTTAAACCGCGAA
CGTCAGCAGCTTGTGGCACAAATCGCTGAAGAAGCGGCGGACATGGTGCGCCGCCAATTTCCTCCTGAGGAACATCGCGT
CTTGGTTGTGGCAGGCGAAGGATGGAATGCCGGAGTGGTGGGCATTGTCGCTTCTAAGCTTGTCGAGCAGTTTTACCGCC
CGGCGGTCGTGCTTTCCATCGACCAGGAAAAAGGGATCGCCAAAGGGTCAGCCCGCAGCATTCATGGGTTTGACTTATTC
GCCAGCCTGTCGCAATGCCGCGACCTGTTGCCGCACTTTGGCGGCCACCCGATGGCGGCGGGGATGACATTGGCGCTTGA
TGATGTCGAAGAATTGCGGCAACGGCTGAACGCCATCGCCGCCGAAACGTTGTCTGAGGACGATTTTACGCCGCCGACGT
TCATCGATGCTTCCTGTTCGATTGCTGAGTTGACGCTCGACGCCGCCCGCGGTCTTGAGCGGTTCGCTCCGTTTGGCGTC
GGCAATCCGCGGCCGCTTGTTCTCATTGAAGGGGCGTCCGTTGAAACGATGCGGCGCGTCGGGGCGAACGGAGCCCATAT
GAAAGCCGTCTTTTCCCAAGACGGGGCCGCGATCGATGCCATCGGCTTCGGCCTCGGGCCGTTATGCGAAGAAATCGCTC
CGGATGCGCGCATTTCGGCGGTCGGGGAGCTGTCGGTGAACGAATGGAACGGGTTCGCCAAGCCGCAGCTGTCGTTGTGT
GATCTGGCGGTCAGCGACTGCCAGCTGTTTGACGTCCGCGGCTGCCGCGACGTCCGTCCACTTCTTGAGCGGCTGCCAAA
AGAGAAGCGGCTAGTCGTCTCCTTTCGCTGCAAAACTGGACAGCGCCCGGACGTGGCTCCATTTCGCGGGGAGCTTCATT
GCGTGCCGACCGAAGAAGAGGCGGGCGCCTTATCGATTGACGACCGCTATGTCGTGCTGCTTGACGTGCCGCCGCGGCTG
GCCTTGCTGTCGGCGCTTCTTGGCAGCGGGCGGCCGGCGCGCATTTACGCGGTGTTCGCCCAGCCCGAGGCGCAATTTTT
CCGCACGTTTCCGACGCGCGAACATTTTAAATGGTTTTACGCCTTTTTGCATCAACACCGTTCGTTTCCGCTCGCCAAGC
GCGGCGGTGAGCTGGCCCGCGCCCGCGGTTGGACGGAAGAGACGGTTCATTTTATGGCGAAGGTGTTTTTAGAGCTTGAC
TTTATCAGCGAACAAAACGGCGTCATTTCGCTCGTTCATCAGCCGGCGAAGCGCGATTTGCACGAATCGCCGACGTACCG
CCGGCGGCGGGACGAACTTGAGGCGGAGCATCAGTTAGTCTATTCCACTTACGAGCAATTGAAACGCTGTTTGGCGGAAA
TGACACGTTCGCAAACGCACGAGGAGGCAAACGTATCATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHHA1 domain (DHHA1)

(315-439)

RecJ OB domain (RecJ_OB)

(455-560)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.888

98.858

0.523

Multiple sequence alignment