Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | FNJ88_RS02210 | Genome accession | NZ_CP041687 |
| Coordinates | 469141..469794 (+) | Length | 217 a.a. |
| NCBI ID | WP_143851534.1 | Uniprot ID | A0A516NZU5 |
| Organism | Chryseobacterium sp. SNU WT5 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 464141..474794
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNJ88_RS02200 (FNJ88_02200) | aceB | 465709..467286 (-) | 1578 | WP_143851532.1 | malate synthase A | - |
| FNJ88_RS02205 (FNJ88_02205) | - | 467464..468933 (+) | 1470 | WP_143851533.1 | helix-turn-helix domain-containing protein | - |
| FNJ88_RS02210 (FNJ88_02210) | comF | 469141..469794 (+) | 654 | WP_143851534.1 | ComF family protein | Machinery gene |
| FNJ88_RS02215 (FNJ88_02215) | upp | 469947..470597 (-) | 651 | WP_143851535.1 | uracil phosphoribosyltransferase | - |
| FNJ88_RS02220 (FNJ88_02220) | - | 470657..471004 (-) | 348 | WP_143851536.1 | four helix bundle protein | - |
| FNJ88_RS02225 (FNJ88_02225) | der | 471051..472358 (-) | 1308 | WP_143851537.1 | ribosome biogenesis GTPase Der | - |
| FNJ88_RS02230 (FNJ88_02230) | - | 472563..473117 (+) | 555 | WP_143851538.1 | LemA family protein | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25302.34 Da Isoelectric Point: 8.5027
>NTDB_id=373044 FNJ88_RS02210 WP_143851534.1 469141..469794(+) (comF) [Chryseobacterium sp. SNU WT5]
MLLLDLLFPNRCLECNRIIHHDEVVCELCFDQIHFTHHHYAENNLLTEKCRLLFPVENTFALMQFEEDSTSQKIIHQLKY
GGRQKIGKIVAKWTLDNLDFNHAKPDLLVTVPLHSKKQKERGYNQLHLFADTVSEQIKIKCDHTLIKRNFYKKAQAQKNR
EQRVFKENLFSITKSISNQHILLIDDVFTTGNTMSAVAWQILKAGNNKVSILVMAMD
MLLLDLLFPNRCLECNRIIHHDEVVCELCFDQIHFTHHHYAENNLLTEKCRLLFPVENTFALMQFEEDSTSQKIIHQLKY
GGRQKIGKIVAKWTLDNLDFNHAKPDLLVTVPLHSKKQKERGYNQLHLFADTVSEQIKIKCDHTLIKRNFYKKAQAQKNR
EQRVFKENLFSITKSISNQHILLIDDVFTTGNTMSAVAWQILKAGNNKVSILVMAMD
Nucleotide
Download Length: 654 bp
>NTDB_id=373044 FNJ88_RS02210 WP_143851534.1 469141..469794(+) (comF) [Chryseobacterium sp. SNU WT5]
ATGCTCTTACTCGATTTACTTTTCCCCAACCGCTGTTTGGAATGCAACCGCATTATTCATCACGATGAAGTGGTTTGTGA
ATTGTGTTTTGATCAAATTCATTTTACTCATCATCACTATGCCGAAAACAATCTTTTGACTGAAAAATGCCGTTTACTTT
TTCCAGTTGAAAATACTTTTGCTTTAATGCAGTTTGAAGAAGATAGTACAAGTCAGAAAATAATTCATCAACTAAAATAT
GGTGGACGCCAGAAAATTGGAAAAATAGTCGCAAAGTGGACTTTAGACAATTTAGATTTTAATCATGCGAAACCCGATCT
TTTAGTAACCGTTCCACTTCATTCCAAAAAACAGAAAGAACGAGGATATAATCAGTTGCATCTCTTTGCTGATACTGTTT
CAGAACAAATAAAAATAAAGTGCGATCATACTTTGATTAAACGCAATTTCTACAAAAAAGCACAAGCGCAAAAAAATCGG
GAGCAAAGAGTTTTTAAAGAGAATCTTTTTTCAATCACCAAAAGCATTTCAAATCAGCATATTTTATTGATTGATGATGT
TTTCACGACTGGAAACACAATGAGCGCTGTAGCCTGGCAAATTTTGAAAGCGGGAAATAATAAGGTGAGTATTTTGGTAA
TGGCGATGGATTAA
ATGCTCTTACTCGATTTACTTTTCCCCAACCGCTGTTTGGAATGCAACCGCATTATTCATCACGATGAAGTGGTTTGTGA
ATTGTGTTTTGATCAAATTCATTTTACTCATCATCACTATGCCGAAAACAATCTTTTGACTGAAAAATGCCGTTTACTTT
TTCCAGTTGAAAATACTTTTGCTTTAATGCAGTTTGAAGAAGATAGTACAAGTCAGAAAATAATTCATCAACTAAAATAT
GGTGGACGCCAGAAAATTGGAAAAATAGTCGCAAAGTGGACTTTAGACAATTTAGATTTTAATCATGCGAAACCCGATCT
TTTAGTAACCGTTCCACTTCATTCCAAAAAACAGAAAGAACGAGGATATAATCAGTTGCATCTCTTTGCTGATACTGTTT
CAGAACAAATAAAAATAAAGTGCGATCATACTTTGATTAAACGCAATTTCTACAAAAAAGCACAAGCGCAAAAAAATCGG
GAGCAAAGAGTTTTTAAAGAGAATCTTTTTTCAATCACCAAAAGCATTTCAAATCAGCATATTTTATTGATTGATGATGT
TTTCACGACTGGAAACACAATGAGCGCTGTAGCCTGGCAAATTTTGAAAGCGGGAAATAATAAGGTGAGTATTTTGGTAA
TGGCGATGGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
48.611 |
99.539 |
0.484 |