Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VV7356_RS00670 Genome accession   NZ_CP041683
Coordinates   138265..138975 (-) Length   236 a.a.
NCBI ID   WP_026130544.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 133265..143975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS00640 (VV7356_00645) gspL 133459..134658 (+) 1200 WP_017420496.1 type II secretion system protein GspL -
  VV7356_RS00645 (VV7356_00650) - 134666..135157 (+) 492 WP_017789549.1 type II secretion system protein M -
  VV7356_RS00650 (VV7356_00655) - 135159..135920 (+) 762 WP_017789548.1 type II secretion system protein N -
  VV7356_RS00655 (VV7356_00660) cysQ 136038..136865 (-) 828 WP_017789547.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VV7356_RS00660 (VV7356_00665) nudE 136880..137434 (-) 555 WP_017789546.1 ADP compounds hydrolase NudE -
  VV7356_RS00665 (VV7356_00670) nfuA 137550..138134 (-) 585 WP_026130545.1 Fe-S biogenesis protein NfuA -
  VV7356_RS00670 (VV7356_00675) comF 138265..138975 (-) 711 WP_026130544.1 ComF family protein Machinery gene
  VV7356_RS00675 (VV7356_00680) bioH 139064..139831 (+) 768 WP_017789246.1 pimeloyl-ACP methyl ester esterase BioH -
  VV7356_RS00680 (VV7356_00685) - 139969..140439 (+) 471 WP_011078928.1 hypothetical protein -
  VV7356_RS00685 (VV7356_00690) - 140522..142846 (-) 2325 WP_039532658.1 Tex family protein -
  VV7356_RS00690 (VV7356_00695) greB 143082..143564 (+) 483 WP_011149222.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27372.16 Da        Isoelectric Point: 9.6054

>NTDB_id=372999 VV7356_RS00670 WP_026130544.1 138265..138975(-) (comF) [Vibrio vulnificus strain 7356]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQRCGLPTLKVVLQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDHPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQELNKQQRQRNLAGAFRLNRSALPYAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=372999 VV7356_RS00670 WP_026130544.1 138265..138975(-) (comF) [Vibrio vulnificus strain 7356]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCACCACCCGCTCTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCAA
CGTTAAAGGTTGTCCTCCAATGCGGTCAATGCCTGAAATCTCCACCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTCCCGGCCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCACCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAGTGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGAGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCAGC
TTTACCCTATGCGATTCCCAAGCACGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.556

99.153

0.551
  comF Vibrio campbellii strain DS40M4

46.25

100

0.47

Multiple sequence alignment