Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FN924_RS11185 Genome accession   NZ_CP041666
Coordinates   2099597..2101912 (-) Length   771 a.a.
NCBI ID   WP_143894499.1    Uniprot ID   A0A516KH18
Organism   Radiobacillus deserti strain TKL69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2094597..2106912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FN924_RS11165 (FN924_11165) - 2094724..2094990 (-) 267 WP_143894493.1 IreB family regulatory phosphoprotein -
  FN924_RS11170 (FN924_11170) alaS 2095081..2097729 (-) 2649 WP_143894495.1 alanine--tRNA ligase -
  FN924_RS11175 (FN924_11175) - 2098092..2099159 (-) 1068 WP_143897196.1 AI-2E family transporter -
  FN924_RS11180 (FN924_11180) - 2099254..2099442 (-) 189 WP_143894497.1 DUF2797 domain-containing protein -
  FN924_RS11185 (FN924_11185) recD2 2099597..2101912 (-) 2316 WP_143894499.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FN924_RS11190 (FN924_11190) - 2101931..2102602 (-) 672 WP_143894501.1 lipopolysaccharide assembly protein LapB -
  FN924_RS11195 (FN924_11195) mnmA 2102699..2103811 (-) 1113 WP_143894503.1 tRNA 2-thiouridine(34) synthase MnmA -
  FN924_RS11200 (FN924_11200) - 2103826..2104971 (-) 1146 WP_143894505.1 cysteine desulfurase family protein -
  FN924_RS11205 (FN924_11205) cymR 2104999..2105418 (-) 420 WP_143894507.1 cysteine metabolism transcriptional regulator CymR -
  FN924_RS11210 (FN924_11210) - 2105372..2106061 (-) 690 WP_143894509.1 YitT family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 87479.31 Da        Isoelectric Point: 5.0653

>NTDB_id=372905 FN924_RS11185 WP_143894499.1 2099597..2101912(-) (recD2) [Radiobacillus deserti strain TKL69]
MEKEQKKGFIKGELIHTIFTNEHEHFSIAKINVLETDEEIEEKELVVKGYFTRLDPGESYLFQGEFENHKRFGKQYNVHH
YERFIPETIDGVVAYLSSDLFYGIGKKTAQKIVDILGETAISQILNDASVLQKIPGLKAEQAEQLRRSLQEHQGFEHIVV
NLSKYGFGLKMAQKIYEAYKDKALEVLENDPYQFVFDIEGFGFQRADEVAARKGIEKNHPSRIQAGCVYVLHQSTFNGHV
YLPLEDLITNVEQLLNQRSNDVSFDEISKEVVNLNTAQKIIVQESKAYLPSLYYAETGFCSQLHRIMSETIDEEVPTADL
LKIVGSLEEEESLSYGKKQFQAIEQALHSKVMILTGGPGTGKTTVIKGIINAYSGLFDLSLDPRDYDQDRAFPFLLTAPT
GRAAKRLSESTGLPAMTIHRLLGWNGHETFEKDNENQLSGKLIVIDEFSMVDTWLANQLFRAIPRDMRVLIVGDEDQLPS
VGPGQVLADLLASQKIPSIQLDEVYRQKEGSKIIQLAHEIKNNTCTTGSLEKDADFNFISCGEHQVVDVVNQIVQKAYEK
GVDMRDVQILAPMYKTRAGIHQINQQIQSIVNPPSKQKRHIKWGDVEYRTGDKVIQLVNQPEDGVFNGDIGEIVAIFKEN
ETEDKTEQIVISFDEKEVLYLKKDLNHIMHAYCTSIHKSQGSEFQIVVLPVVPSYRRMLRKNLLYTAITRSKSSLIICGD
KQSFLQGIKGEDTNMRYTSLVTFLNELFKIDQQVGVAEEEAEEELSPYDFL

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=372905 FN924_RS11185 WP_143894499.1 2099597..2101912(-) (recD2) [Radiobacillus deserti strain TKL69]
ATGGAAAAGGAACAGAAGAAAGGGTTCATAAAGGGTGAACTCATTCATACCATTTTTACAAATGAACACGAACACTTTTC
CATTGCTAAGATTAACGTTCTAGAAACGGACGAAGAAATCGAGGAAAAAGAGCTCGTTGTAAAAGGGTATTTTACTCGTC
TTGATCCAGGAGAATCGTATCTTTTTCAGGGAGAATTTGAGAACCATAAACGTTTTGGAAAACAATATAACGTCCACCAT
TATGAGCGTTTTATACCGGAGACCATAGATGGCGTTGTTGCTTATTTATCTAGTGACTTGTTTTACGGAATTGGAAAAAA
GACAGCTCAGAAAATCGTAGATATATTAGGAGAAACAGCCATTAGTCAGATTTTAAATGATGCTTCCGTGCTTCAGAAAA
TTCCAGGCTTAAAGGCAGAGCAAGCCGAGCAACTTCGTCGTTCCTTGCAAGAGCATCAGGGATTTGAACATATTGTCGTT
AATCTGTCCAAATACGGATTTGGATTAAAAATGGCTCAAAAAATTTATGAAGCATACAAGGACAAGGCTCTAGAAGTGTT
AGAGAATGATCCATATCAATTTGTGTTTGATATTGAGGGCTTCGGGTTTCAGCGTGCAGATGAGGTAGCTGCTAGAAAAG
GGATTGAAAAGAATCATCCTAGTCGTATTCAAGCGGGTTGTGTGTATGTTTTACATCAAAGCACATTTAATGGCCATGTT
TATTTACCGTTGGAGGATTTAATCACAAATGTTGAGCAGCTTCTTAATCAACGTTCGAACGATGTTTCATTTGATGAGAT
TTCGAAAGAGGTTGTTAACCTAAATACAGCTCAGAAGATAATTGTACAGGAGTCAAAGGCGTATTTACCAAGTTTGTATT
ATGCGGAAACAGGGTTTTGCTCGCAATTACACCGAATTATGAGTGAAACGATAGATGAGGAAGTTCCAACTGCGGACCTT
TTAAAAATCGTAGGTTCCCTAGAAGAAGAAGAATCGCTTAGCTATGGAAAAAAACAGTTTCAGGCAATTGAGCAAGCCTT
ACATTCTAAAGTGATGATTTTAACTGGGGGGCCTGGTACGGGAAAAACCACTGTAATAAAAGGGATTATTAATGCGTATT
CTGGACTCTTTGATTTATCATTAGACCCTAGAGATTATGACCAAGATCGGGCTTTTCCGTTTTTATTAACTGCACCAACA
GGTCGAGCAGCCAAGCGCTTATCAGAATCAACAGGGCTTCCAGCCATGACGATTCACCGGTTACTTGGATGGAACGGACA
CGAAACGTTTGAGAAGGACAATGAGAATCAGTTATCTGGAAAGCTTATCGTCATTGATGAGTTTTCGATGGTGGATACAT
GGCTTGCTAACCAATTATTTCGAGCCATCCCTAGAGATATGCGAGTCTTAATTGTTGGAGATGAAGATCAGCTCCCTTCT
GTAGGCCCTGGACAAGTACTTGCAGATTTATTGGCAAGTCAGAAGATTCCTTCCATCCAACTAGATGAGGTATATCGTCA
AAAGGAAGGGTCTAAAATCATTCAGCTCGCCCATGAAATTAAAAATAATACATGTACTACTGGCTCCCTAGAAAAAGATG
CTGATTTTAATTTTATTTCATGTGGGGAGCATCAAGTGGTAGACGTTGTGAATCAAATCGTCCAAAAAGCGTACGAAAAA
GGGGTGGATATGCGAGACGTACAAATCCTTGCTCCTATGTACAAGACGAGGGCTGGTATCCATCAAATTAATCAACAGAT
ACAATCTATCGTGAATCCGCCTAGTAAACAGAAACGTCATATTAAGTGGGGAGACGTGGAATATCGAACAGGAGACAAAG
TGATTCAGCTCGTGAATCAGCCAGAAGATGGGGTTTTTAACGGAGACATCGGAGAAATTGTTGCGATTTTTAAAGAAAAT
GAAACGGAAGATAAGACCGAACAAATTGTTATCTCATTTGATGAAAAAGAAGTCCTGTATTTGAAGAAAGATCTAAATCA
TATCATGCATGCCTACTGCACTTCTATTCATAAATCACAAGGAAGTGAGTTTCAGATTGTCGTGTTACCGGTAGTACCGA
GTTACCGACGTATGCTTCGTAAAAATTTATTATATACTGCAATTACAAGAAGTAAGAGTTCCTTAATTATTTGTGGGGAC
AAGCAATCCTTCTTACAAGGAATAAAAGGAGAAGACACGAATATGAGATATACATCCTTGGTTACTTTTTTAAATGAGTT
GTTTAAGATTGACCAACAGGTAGGGGTAGCGGAGGAAGAAGCAGAAGAAGAACTGTCTCCATATGACTTTTTATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(670-718)

Helix-hairpin-helix containing domain (HHH_RecD2)

(151-241)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(583-653)

AAA domain (AAA_30)

(335-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516KH18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

47.261

100

0.481

Multiple sequence alignment