Detailed information NTG0037277

Bioinformatically predicted

Overview

• Name: rcrP
• Type: Regulator
• Locus tag: BLJ_RS09830
• Genome accession: NC_014169
• Coordinates: 2338982..2340853 (-)
• Length: 623 a.a.
• NCBI ID: WP_013141460.1
• Uniprot ID: A0A7U4Z647
• Organism: Bifidobacterium longum subsp. longum JDM301
• Function: regulate competence (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2341040..2368171	2338982..2340853	flank	187

Gene organization within MGE regions

Location: 2338982..2368171

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BLJ_RS09830 (BLJ_1952)	rcrP	2338982..2340853 (-)	1872	WP_013141460.1	ABC transporter ATP-binding protein	Regulator
BLJ_RS09835 (BLJ_1953)	-	2341040..2341561 (-)	522	WP_007052942.1	MarR family winged helix-turn-helix transcriptional regulator	-
BLJ_RS09840	-	2341923..2342486 (+)	564	WP_007055052.1	BRO family protein	-
BLJ_RS09845 (BLJ_1954)	-	2342982..2346086 (-)	3105	WP_371818283.1	bacterial Ig-like domain-containing protein	-
BLJ_RS12390	-	2346391..2346456 (-)	66	WP_349816200.1	hypothetical protein	-
BLJ_RS09850 (BLJ_1955)	-	2347030..2351571 (-)	4542	WP_013141463.1	exo-beta-1,6-galactobiohydrolase	-
BLJ_RS09855 (BLJ_1956)	-	2351875..2353371 (-)	1497	WP_013141464.1	RNA-binding domain-containing protein	-
BLJ_RS09860 (BLJ_1957)	-	2353711..2355234 (-)	1524	WP_013141465.1	amino acid permease	-
BLJ_RS09865 (BLJ_1958)	-	2355560..2356765 (-)	1206	WP_013141466.1	ROK family transcriptional regulator	-
BLJ_RS12125 (BLJ_1959)	-	2356957..2357957 (-)	1001	Protein_1955	IS3 family transposase	-
BLJ_RS09875	istA	2358109..2359419 (+)	1311	WP_080515312.1	IS21 family transposase	-
BLJ_RS09880	istB	2359419..2360189 (+)	771	WP_038426051.1	IS21-like element helper ATPase IstB	-
BLJ_RS09885 (BLJ_1962)	-	2360744..2363773 (-)	3030	WP_013141467.1	alpha-mannosidase	-
BLJ_RS09890	-	2363830..2364714 (-)	885	WP_038426053.1	carbohydrate ABC transporter permease	-
BLJ_RS09895 (BLJ_1963)	-	2364707..2365582 (-)	876	WP_013141468.1	carbohydrate ABC transporter permease	-
BLJ_RS09900 (BLJ_1964)	-	2365681..2367045 (-)	1365	WP_013141469.1	extracellular solute-binding protein	-
BLJ_RS09905 (BLJ_1965)	-	2367211..2367444 (-)	234	WP_013141470.1	transposase	-
BLJ_RS12130	-	2367464..2367727 (-)	264	WP_230473965.1	IS3 family transposase	-
BLJ_RS12135 (BLJ_1966)	-	2367878..2368171 (-)	294	WP_013141471.1	IS3 family transposase	-

Sequence

Protein

• Length: 623 a.a.
• Molecular weight: 67927.42 Da
• Isoelectric Point: 5.1908

>NTDB_id=37277 BLJ_RS09830 WP_013141460.1 2338982..2340853(-) (rcrP) [Bifidobacterium longum subsp. longum JDM301]
MFRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITVMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQDAKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVKNGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGEAAEGADIPA
EQLNRVKAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide

• Length: 1872 bp

>NTDB_id=37277 BLJ_RS09830 WP_013141460.1 2338982..2340853(-) (rcrP) [Bifidobacterium longum subsp. longum JDM301]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGTGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAGATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGTTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCGTCATGATGGCCATGGTCATGCCGAAGTTCAAGGCGATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGACGCCAAATTCACCAAGGCCAACAAGGACCTCACCGAGACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGTTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCTTACCTCATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACCGAG
CCGATCGTCAAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGCCAGAGGGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCGAGGCCGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAAGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

• ABC transporter transmembrane region (ABC_membrane) (54-292)

• ABC transporter (ABC_tran) (359-543)

3D structure

• AlphaFold DB: A0A7U4Z647

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rcrP	Streptococcus mutans UA159	48.815	100	0.496