Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FNL97_RS04785 Genome accession   NZ_CP041632
Coordinates   947777..950131 (+) Length   784 a.a.
NCBI ID   WP_143415149.1    Uniprot ID   -
Organism   Geobacillus sp. E263     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 942777..955131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL97_RS04760 - 943541..944197 (+) 657 WP_015864608.1 YitT family protein -
  FNL97_RS04765 - 944216..944632 (+) 417 WP_015864607.1 Rrf2 family transcriptional regulator -
  FNL97_RS04770 - 944653..945798 (+) 1146 WP_062677176.1 cysteine desulfurase family protein -
  FNL97_RS04775 mnmA 945816..946931 (+) 1116 WP_015864605.1 tRNA 2-thiouridine(34) synthase MnmA -
  FNL97_RS04780 - 947100..947804 (+) 705 WP_143415148.1 tetratricopeptide repeat protein -
  FNL97_RS04785 recD2 947777..950131 (+) 2355 WP_143415149.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FNL97_RS04790 - 950167..950640 (+) 474 WP_143415150.1 PRC-barrel domain-containing protein -
  FNL97_RS04795 - 950656..950847 (+) 192 WP_015864601.1 hypothetical protein -
  FNL97_RS04800 - 950860..950994 (+) 135 WP_015864600.1 YrzQ family protein -
  FNL97_RS04805 - 951097..952158 (+) 1062 WP_143415151.1 AI-2E family transporter -
  FNL97_RS04810 alaS 952487..955120 (+) 2634 WP_097354777.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87846.48 Da        Isoelectric Point: 5.1452

>NTDB_id=372618 FNL97_RS04785 WP_143415149.1 947777..950131(+) (recD2) [Geobacillus sp. E263]
MQQQESFVLGETSFIKGSYISTIFHNEANLYSVVRVRVVETNEAYDEQEVVVTGYFPKMNEHDTYIFYGKFHDHPKFGRQ
YVVEHFRKQFPNTKDGIIHYLSSDLFKGIGKKTAKAIVEALGENAISKILADPSVLDDVPKLSKQKAKELYDTLRAHEGL
EQTMIALSQFGFGPQLSMKIYQVYQDETLSVIQQNPYQLVEDVEGIGFGRADELGYRLGISGSHPARIRAACLFVLERDC
LQEGHVYVTKEQLMTSAKQLLEAKRNEAISEEAIEQMLLMLAEEGKLINEEEKFYIPSLYFAEKGIVTNVKRLLQQTEAV
MTFPESEFLLAIGRLEERLSVQYAPLQKEAIRQAISSPLFILTGGPGTGKTTVIKGIVEIFADLHGLSLDPKDYTKDHPF
PILLAAPTGRAAKRMSEATGLPAVTIHRLLGWNGAEGFTHDEDEPIRGKLLIVDEMSMVDTWLANQLFKSIPDGMQVILV
GDEDQLPSVGPGQVLKDLLQAGVIPTIRLTEVYRQAEGSSIIELAHQMKNGVIPPDLTAQKADRSFIRCQTGQIAEVVRQ
IADNARRKGFAVKDIQVLAPMYRGPAGIDRLNQVLQDLFNPKSEKKRELSVGDVVYRVGDKVLQLVNQPDDNVFNGDIGE
IVSIFYAKENTEKQDLVVVSFDGIEVTYSRQDLSQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFKLGIARSDDGARQTTLTEKLQRSLAPITEGELPMEDANIGMENVSPYDFMND

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=372618 FNL97_RS04785 WP_143415149.1 947777..950131(+) (recD2) [Geobacillus sp. E263]
TTGCAGCAACAAGAATCCTTTGTTTTAGGGGAAACATCGTTTATTAAAGGGTCATATATTTCTACGATTTTTCATAATGA
AGCAAATTTATATTCCGTCGTTCGCGTTCGAGTGGTGGAAACGAACGAAGCATATGATGAACAAGAAGTTGTTGTAACTG
GATATTTCCCCAAAATGAATGAGCATGATACGTATATTTTTTATGGAAAATTTCACGACCACCCGAAGTTCGGGCGGCAA
TATGTTGTGGAACATTTTCGGAAACAATTTCCAAACACAAAAGACGGAATCATTCATTACTTATCAAGCGATTTGTTTAA
AGGAATTGGGAAAAAAACGGCAAAAGCGATCGTCGAAGCGCTCGGCGAAAATGCTATTTCGAAAATTTTAGCGGATCCTA
GCGTATTGGACGATGTTCCGAAATTGTCAAAACAAAAAGCAAAAGAGTTGTATGATACGTTGCGTGCCCATGAAGGGTTA
GAACAAACGATGATTGCTCTTTCTCAATTTGGTTTTGGTCCGCAATTGTCGATGAAAATTTACCAAGTATATCAAGATGA
AACCCTTTCTGTTATCCAGCAAAATCCATACCAGCTTGTCGAAGATGTGGAAGGGATCGGATTTGGCCGCGCCGATGAAT
TAGGATACCGTCTTGGAATTTCCGGCAGCCATCCTGCGCGCATTCGTGCAGCTTGTTTGTTTGTGTTAGAGCGGGATTGT
CTTCAAGAAGGGCATGTTTATGTGACGAAAGAACAGCTTATGACAAGCGCGAAACAGCTTTTGGAGGCGAAACGGAACGA
AGCGATCAGTGAGGAAGCCATCGAGCAAATGCTGTTAATGCTTGCGGAGGAAGGAAAATTAATCAATGAAGAGGAAAAAT
TTTATATTCCATCCCTTTATTTTGCCGAAAAAGGAATCGTAACCAATGTAAAACGTCTTTTGCAACAAACAGAAGCAGTG
ATGACGTTTCCGGAATCGGAATTTTTATTAGCGATCGGAAGGCTGGAGGAACGTTTATCCGTTCAATATGCTCCCTTGCA
AAAAGAAGCCATTCGACAAGCGATTTCTTCCCCGTTATTTATTTTGACGGGTGGTCCTGGCACAGGAAAAACGACGGTGA
TTAAAGGAATCGTAGAAATTTTCGCTGATTTGCACGGTCTTTCTCTCGATCCGAAAGATTACACGAAAGATCACCCATTT
CCGATTTTGCTTGCCGCGCCGACAGGAAGAGCAGCAAAGAGAATGAGTGAAGCGACGGGATTGCCTGCTGTTACGATTCA
TCGTTTGCTTGGCTGGAATGGCGCGGAAGGCTTTACACATGATGAGGATGAGCCGATTCGCGGGAAGCTCTTAATTGTTG
ACGAAATGTCCATGGTCGATACGTGGCTGGCCAATCAGCTATTTAAGTCGATTCCGGACGGCATGCAAGTGATTCTCGTC
GGCGACGAAGATCAGCTGCCATCCGTTGGACCTGGACAAGTGTTAAAGGATTTATTACAAGCGGGTGTCATCCCGACCAT
TCGGCTAACAGAAGTATATCGGCAAGCGGAAGGTTCATCGATTATTGAATTGGCGCACCAAATGAAAAATGGTGTCATCC
CCCCGGATTTAACCGCACAAAAGGCGGATCGCTCATTCATTCGCTGTCAGACAGGGCAAATTGCTGAAGTCGTCCGGCAA
ATTGCTGATAATGCGCGAAGAAAAGGCTTTGCAGTAAAAGATATTCAAGTGCTTGCGCCAATGTATCGCGGTCCTGCCGG
AATTGACCGCCTTAATCAAGTGTTGCAAGATTTGTTTAATCCAAAATCAGAGAAAAAGCGGGAACTTTCTGTCGGCGATG
TAGTGTATCGGGTTGGCGATAAGGTGCTGCAGCTTGTCAATCAGCCTGATGACAATGTATTTAATGGTGATATCGGTGAA
ATTGTCTCCATTTTTTACGCAAAAGAAAATACGGAAAAACAAGATTTAGTCGTTGTTTCTTTTGATGGCATTGAGGTAAC
GTATTCGCGGCAAGATTTGTCGCAAATTACACATGCGTATTGTTGTTCCATTCATAAATCGCAAGGAAGCGAATTTCCAA
TTGTCATTTTGCCGGTTGTAAAAAGCTATTATCGCATGTTAAAGAGAAATTTATTATATACTGCGGTGACAAGAAGCAAA
CAGTTTTTAATTTTATGTGGGGAAGAAGAAGCGTTTAAGTTAGGCATTGCCCGCAGTGATGATGGGGCTCGGCAAACAAC
GTTAACGGAAAAGTTGCAAAGATCTCTTGCACCGATTACAGAAGGAGAACTGCCGATGGAGGATGCGAACATCGGAATGG
AAAACGTTTCACCGTATGATTTTATGAACGACTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

AAA domain (AAA_30)

(343-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.396

100

0.643

Multiple sequence alignment