Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FNL97_RS04690 Genome accession   NZ_CP041632
Coordinates   925277..927634 (+) Length   785 a.a.
NCBI ID   WP_015864620.1    Uniprot ID   A0A9X7K0Q2
Organism   Geobacillus sp. E263     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 920277..932634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNL97_RS04675 spoVB 920692..922254 (-) 1563 WP_097354784.1 stage V sporulation protein B -
  FNL97_RS04680 - 922358..922654 (+) 297 WP_015864622.1 post-transcriptional regulator -
  FNL97_RS04685 secDF 922849..925101 (+) 2253 WP_143415143.1 protein translocase subunit SecDF -
  FNL97_RS04690 recJ 925277..927634 (+) 2358 WP_015864620.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FNL97_RS04695 - 927634..928146 (+) 513 WP_015864619.1 adenine phosphoribosyltransferase -
  FNL97_RS04700 - 928346..929125 (+) 780 Protein_919 HD domain-containing protein -
  FNL97_RS04705 - 929225..930103 (+) 879 WP_143415144.1 IS982 family transposase -
  FNL97_RS04710 - 930127..931554 (+) 1428 Protein_921 RelA/SpoT family protein -
  FNL97_RS04715 dtd 931569..932027 (+) 459 WP_062677168.1 D-aminoacyl-tRNA deacylase -
  FNL97_RS17905 - 932137..932313 (+) 177 WP_015864616.1 hypothetical protein -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88070.31 Da        Isoelectric Point: 5.4834

>NTDB_id=372617 FNL97_RS04690 WP_015864620.1 925277..927634(+) (recJ) [Geobacillus sp. E263]
MLIAKTRWDVKRPDENIVTHLVEQSHMDPLIAKLLVHRGVRTVEEANAFLYPLKQPFHDPFLLDGMERAIERIQRAIQHG
EHILVYGDYDADGVSSTTVMVSALKEAGAIVDFYIPNRFTEGYGPNENAFRWAKEQGFSLIITVDNGIAAVKEVALANEL
GMDVIITDHHEVGPALPEAYEIIHPKKPGSTYPFRELAGVGVAFKVAHALLGDVPRHFLDVVAIGTIADLVSLTGENRLL
VAQGLEQLRNTKRIGLRALCKQCGIEAKEINEQTVGFVIAPRMNAVGRLGEATPAVRLLMTEKEEEAQRLAKEMDDLNRE
RQQLVAKIAEEAAQIVNEQFPPSENKVLVIAKEGWNPGVIGIVASRLVEQFYRPTIVLSIDSEKGIAKGSARSIHGFDMF
SSLSTCRDILPHFGGHPMAAGMTLSVDHIDELRQRLNALADDMLTADDFTPITPIDAVCSVSDLTLSVAEQLEKFAPFGV
DNAKPLFLMENVSVETIRRIGADQSHLKAVFAQNGAAIDSVGFGFGYLCDEIAPDAKVSVVGELMVNEWNNLRKPQLMIC
DVAVHECQLYDIRGMRDVRPLIASLPKDKRMLIMFREGTADALGLEAYKEEIYYTASVEEASRLCLDNRYVVLLDMPTSL
EIIKMLLRSSLPARIYALFYQRETHFFRTLPTRDHFKWFYAFLRKKGVFNLAKYGGELARARGWTEETVRFMAKVFLELE
FITQQDGVVSLVPQPAKRDLSESPTYRFKQAQFELENLFLYSTYEQLKRCLFEMKGSQTYEEANV

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=372617 FNL97_RS04690 WP_015864620.1 925277..927634(+) (recJ) [Geobacillus sp. E263]
ATGTTAATAGCAAAAACACGTTGGGATGTGAAACGTCCTGACGAAAATATCGTAACGCATTTAGTAGAACAGTCGCATAT
GGATCCGTTGATTGCGAAGCTTCTTGTTCATCGTGGAGTTCGTACGGTAGAAGAGGCGAACGCGTTTTTATATCCGCTGA
AACAACCGTTTCATGATCCGTTTTTGCTAGATGGGATGGAACGGGCAATTGAGCGGATTCAACGGGCGATACAACATGGA
GAGCATATTTTGGTATATGGTGATTATGATGCTGACGGCGTAAGCAGCACGACGGTAATGGTTAGTGCTCTGAAGGAAGC
TGGCGCCATTGTGGATTTTTACATTCCCAATCGATTTACCGAAGGATACGGTCCGAATGAGAATGCATTTCGTTGGGCAA
AGGAGCAAGGATTTTCTCTGATTATCACGGTCGATAACGGCATTGCTGCAGTGAAGGAAGTGGCGCTTGCCAATGAGCTT
GGTATGGATGTCATTATTACAGATCATCATGAAGTGGGACCGGCGTTGCCGGAAGCATATGAAATTATTCATCCGAAAAA
GCCCGGCAGTACATACCCGTTTCGTGAATTAGCAGGCGTCGGAGTAGCATTTAAAGTTGCCCACGCATTGCTTGGGGATG
TGCCGCGTCATTTTTTAGATGTCGTAGCAATTGGAACGATCGCTGATCTCGTTTCCCTTACCGGAGAAAATCGTCTGTTG
GTTGCACAAGGGCTTGAACAGTTGCGAAATACGAAACGTATTGGATTGCGTGCATTGTGTAAACAATGTGGAATAGAAGC
AAAAGAAATTAACGAACAGACGGTTGGGTTCGTTATTGCGCCGCGGATGAATGCAGTTGGCCGGTTGGGAGAAGCAACCC
CTGCTGTCAGATTGTTAATGACGGAGAAAGAAGAGGAAGCACAAAGACTTGCGAAAGAAATGGATGATTTAAATCGGGAG
CGGCAGCAGCTTGTCGCGAAAATAGCGGAGGAAGCGGCACAAATAGTAAATGAACAATTTCCGCCATCCGAAAATAAAGT
GCTTGTGATCGCAAAAGAAGGATGGAATCCAGGGGTCATTGGCATTGTTGCTTCCCGATTGGTTGAACAATTTTACCGTC
CGACGATTGTTTTGAGCATTGATTCCGAGAAAGGAATTGCAAAAGGTTCGGCGCGAAGCATTCATGGGTTTGATATGTTT
TCAAGCTTATCGACATGTCGCGATATTTTGCCACATTTTGGCGGGCATCCAATGGCGGCGGGAATGACATTATCGGTTGA
TCATATTGATGAATTGCGTCAGCGTCTCAACGCACTTGCCGATGATATGTTGACAGCCGATGATTTTACCCCAATTACAC
CGATTGATGCAGTTTGTTCCGTATCTGATTTAACGCTTTCGGTAGCCGAACAGCTTGAAAAGTTTGCTCCGTTTGGTGTA
GATAACGCAAAGCCTCTTTTTTTAATGGAAAATGTATCAGTGGAAACGATCCGACGCATCGGGGCTGACCAGTCGCATTT
AAAGGCTGTTTTCGCCCAAAATGGCGCTGCGATTGATAGCGTCGGGTTCGGCTTTGGTTATTTGTGCGATGAAATCGCTC
CAGATGCGAAAGTGTCCGTGGTTGGCGAGTTAATGGTGAATGAGTGGAACAATCTTCGCAAACCGCAGCTAATGATTTGC
GATGTTGCGGTGCATGAATGTCAATTGTATGATATTCGCGGTATGCGCGATGTACGGCCACTGATTGCGTCTCTTCCGAA
AGATAAGCGGATGTTGATTATGTTTCGGGAAGGTACGGCAGATGCATTAGGACTTGAAGCATATAAAGAAGAGATTTACT
ACACGGCCTCAGTGGAAGAAGCGTCGCGGCTTTGTTTAGATAACCGGTACGTTGTGCTGTTAGATATGCCAACGTCTTTG
GAAATCATAAAAATGTTGTTACGTTCTAGTTTACCTGCGCGCATTTATGCGTTATTCTATCAAAGGGAGACTCATTTTTT
TCGCACGTTGCCAACGCGTGATCATTTTAAATGGTTTTATGCGTTTTTGAGAAAAAAAGGTGTGTTTAACTTGGCTAAGT
ATGGTGGCGAGTTAGCACGTGCGCGTGGATGGACAGAAGAAACTGTCCGGTTTATGGCAAAAGTATTTCTCGAGCTGGAA
TTTATTACGCAACAGGATGGAGTTGTATCGCTTGTTCCTCAACCGGCTAAACGCGATTTAAGCGAATCGCCGACTTATCG
CTTTAAACAAGCTCAGTTTGAGCTTGAAAATCTATTTTTGTATTCAACATATGAACAATTAAAGCGTTGTCTTTTCGAAA
TGAAAGGTTCGCAAACATACGAGGAGGCAAATGTGTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(302-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.129

99.745

0.53

Multiple sequence alignment