Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   CVULP_RS06400 Genome accession   NZ_CP041617
Coordinates   1243233..1243967 (-) Length   244 a.a.
NCBI ID   WP_099507752.1    Uniprot ID   -
Organism   Campylobacter vulpis strain 251/13     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1238233..1248967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVULP_RS06360 (CVULP_1240) pgsA 1238928..1239458 (+) 531 WP_099507757.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CVULP_RS06365 (CVULP_1241) rseP 1239455..1240561 (+) 1107 WP_099507755.1 RIP metalloprotease RseP -
  CVULP_RS06370 (CVULP_1242) rpsF 1240650..1241027 (+) 378 WP_099461848.1 30S ribosomal protein S6 -
  CVULP_RS06375 (CVULP_1243) - 1241036..1241533 (+) 498 WP_099461851.1 single-stranded DNA-binding protein -
  CVULP_RS06380 (CVULP_1244) rpsR 1241546..1241806 (+) 261 WP_099461854.1 30S ribosomal protein S18 -
  CVULP_RS06385 (CVULP_1245) - 1241815..1242267 (-) 453 WP_099461856.1 hypothetical protein -
  CVULP_RS06390 (CVULP_1246) - 1242264..1242938 (-) 675 WP_099507753.1 type II secretion system protein J -
  CVULP_RS06395 (CVULP_1247) - 1242922..1243236 (-) 315 WP_099461861.1 type II secretion system protein -
  CVULP_RS06400 (CVULP_1248) proC 1243233..1243967 (-) 735 WP_099507752.1 pyrroline-5-carboxylate reductase Machinery gene
  CVULP_RS06405 (CVULP_1249) fliW 1243967..1244356 (-) 390 WP_099461865.1 flagellar assembly protein FliW -
  CVULP_RS06410 (CVULP_1250) - 1244496..1245143 (+) 648 WP_099461867.1 outer membrane protein assembly factor BamD -
  CVULP_RS06415 (CVULP_1251) lon 1245165..1247540 (+) 2376 WP_099507750.1 endopeptidase La -
  CVULP_RS06420 (CVULP_1252) - 1247658..1248392 (-) 735 WP_099507748.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26865.37 Da        Isoelectric Point: 8.2098

>NTDB_id=372478 CVULP_RS06400 WP_099507752.1 1243233..1243967(-) (proC) [Campylobacter vulpis strain 251/13]
MSSIYILANGAMASALAYGLRDFYEIYIVGREVQKLEYLRKEGFKTLLYNEFDLENKNVILAFKPYALNEMSQILKGEAR
ILISVLANTSLKDLECIRAQNIARIMPNVAAKYKASTTPFILKNGLFKEEIVQILTSFGNAYELSSEKQMPSAMALSGCA
PAFLSLVAEALANGGVYRGLDKELSLKLTQGLFESFSTLLAHEHPALIKESVCSPAGVSIKGVKVLEERAIRAAFMEAVY
ISSK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=372478 CVULP_RS06400 WP_099507752.1 1243233..1243967(-) (proC) [Campylobacter vulpis strain 251/13]
ATGTCTAGCATTTATATCCTTGCAAATGGTGCTATGGCGAGTGCCTTAGCTTATGGTTTGAGAGATTTTTATGAAATTTA
TATAGTGGGGCGTGAGGTTCAAAAACTTGAATATTTAAGAAAAGAAGGTTTTAAGACTTTACTTTATAACGAATTTGATT
TGGAAAATAAAAATGTTATTTTAGCTTTTAAACCTTACGCTTTAAATGAAATGTCTCAAATTTTAAAAGGAGAGGCAAGA
ATTTTAATTTCTGTTTTGGCAAATACTAGCTTGAAAGATTTAGAGTGTATTAGAGCTCAAAATATTGCAAGGATTATGCC
AAATGTCGCTGCTAAATATAAAGCTTCTACCACGCCTTTTATCTTAAAAAATGGGCTTTTTAAAGAAGAGATAGTGCAAA
TTTTAACAAGTTTTGGTAATGCTTATGAATTAAGTAGTGAAAAGCAAATGCCAAGTGCTATGGCTTTAAGTGGCTGTGCG
CCAGCTTTTCTTTCTTTAGTGGCTGAGGCTCTTGCAAATGGGGGTGTGTATAGGGGTTTAGATAAGGAGTTAAGTTTAAA
GCTCACGCAAGGACTTTTTGAAAGCTTTTCTACACTTTTAGCTCACGAGCACCCAGCTCTTATCAAAGAAAGTGTTTGCT
CACCTGCTGGTGTGAGTATAAAAGGCGTGAAGGTGTTGGAAGAAAGGGCTATTAGAGCGGCATTTATGGAGGCTGTTTAT
ATCAGCTCCAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(147-239)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

65.833

98.361

0.648

Multiple sequence alignment