Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   G4235_RS01580 Genome accession   NZ_CP048920
Coordinates   343838..344602 (-) Length   254 a.a.
NCBI ID   WP_001136233.1    Uniprot ID   Q8FCN0
Organism   Escherichia coli strain SCU-101     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 338838..349602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4235_RS01550 (G4235_01545) - 339472..340830 (-) 1359 WP_001304938.1 PTS galactitol transporter subunit IIC -
  G4235_RS01555 (G4235_01550) - 340907..341188 (-) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  G4235_RS01560 (G4235_01555) - 341185..341658 (-) 474 WP_001443177.1 PTS sugar transporter subunit IIA -
  G4235_RS01565 (G4235_01560) - 341683..342429 (-) 747 WP_001304937.1 GntR family transcriptional regulator -
  G4235_RS01570 (G4235_01565) nikR 342628..343029 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  G4235_RS01575 (G4235_01570) nikE 343035..343841 (-) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  G4235_RS01580 (G4235_01575) amiE 343838..344602 (-) 765 WP_001136233.1 nickel import ATP-binding protein NikD Regulator
  G4235_RS01585 (G4235_01580) nikC 344602..345435 (-) 834 WP_001008953.1 nickel ABC transporter permease subunit NikC -
  G4235_RS01590 (G4235_01585) nikB 345432..346376 (-) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  G4235_RS01595 (G4235_01590) nikA 346376..347950 (-) 1575 WP_000493122.1 nickel ABC transporter substrate-binding protein -
  G4235_RS01600 (G4235_01595) acpT 348061..348648 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26840.46 Da        Isoelectric Point: 6.6882

>NTDB_id=371622 G4235_RS01580 WP_001136233.1 343838..344602(-) (amiE) [Escherichia coli strain SCU-101]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNVPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=371622 G4235_RS01580 WP_001136233.1 343838..344602(-) (amiE) [Escherichia coli strain SCU-101]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGATCTCGACGTTGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGTCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FCN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398