Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FLP15_RS03550 Genome accession   NZ_CP041356
Coordinates   682905..683693 (+) Length   262 a.a.
NCBI ID   WP_142766024.1    Uniprot ID   -
Organism   Lactococcus protaetiae strain KACC 19320     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 677905..688693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLP15_RS03530 (FLP15_03530) - 678704..678919 (+) 216 WP_120772880.1 hypothetical protein -
  FLP15_RS03535 (FLP15_03535) - 678953..679192 (+) 240 WP_120772881.1 hypothetical protein -
  FLP15_RS12990 - 679753..680754 (+) 1002 WP_223804717.1 hypothetical protein -
  FLP15_RS12995 - 680811..681332 (+) 522 WP_223804718.1 hypothetical protein -
  FLP15_RS03545 (FLP15_03545) - 681536..682750 (+) 1215 WP_142766023.1 pyridoxal phosphate-dependent aminotransferase -
  FLP15_RS03550 (FLP15_03550) codY 682905..683693 (+) 789 WP_142766024.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FLP15_RS03555 (FLP15_03555) gatC 683853..684158 (+) 306 WP_142766025.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  FLP15_RS03560 (FLP15_03560) gatA 684160..685620 (+) 1461 WP_142766026.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  FLP15_RS03565 (FLP15_03565) - 685622..686233 (+) 612 WP_142766027.1 NUDIX hydrolase N-terminal domain-containing protein -
  FLP15_RS03570 (FLP15_03570) - 686243..686725 (+) 483 WP_142766028.1 GyrI-like domain-containing protein -
  FLP15_RS03575 (FLP15_03575) gatB 686855..688288 (+) 1434 WP_142767419.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29155.52 Da        Isoelectric Point: 4.5184

>NTDB_id=371489 FLP15_RS03550 WP_142766024.1 682905..683693(+) (codY) [Lactococcus protaetiae strain KACC 19320]
MATLLEKTRKITAILQDGVTDLQQELPYNSMTERLANVIDCNACVINTKGELLGYSLPYNTNNERVDQFFYDRKLPDEYV
RAAVRIYDTMANVPVDKPLAIFPEEVLSNFPNGVTTLAPIYGSGMRLGTFIMWREDGEFTDDDLILVELATTVIGVQLSN
LKLEQMEENIRKDTMATMAVNTLSYSEMKAVKAIIEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSLG
MKGTYLKVLNTGLFDKLAGRNF

Nucleotide


Download         Length: 789 bp        

>NTDB_id=371489 FLP15_RS03550 WP_142766024.1 682905..683693(+) (codY) [Lactococcus protaetiae strain KACC 19320]
GTGGCTACATTACTTGAAAAAACACGTAAAATCACTGCGATTTTGCAAGATGGAGTGACTGATTTGCAGCAGGAACTTCC
ATACAATAGCATGACTGAACGTTTAGCAAATGTCATTGACTGTAATGCCTGTGTGATTAATACGAAGGGCGAGTTACTTG
GTTACTCACTACCTTACAATACTAATAACGAACGTGTTGACCAATTTTTCTATGACCGTAAGTTACCTGATGAATATGTT
CGGGCTGCGGTTCGTATTTATGATACAATGGCAAATGTTCCAGTTGACAAGCCTTTAGCGATTTTCCCAGAAGAAGTACT
CAGTAATTTCCCTAATGGAGTGACAACTTTGGCACCAATCTATGGTTCTGGTATGCGTTTAGGTACGTTTATCATGTGGC
GTGAAGATGGTGAGTTCACGGATGATGACCTTATTTTGGTTGAGTTGGCAACAACAGTTATTGGCGTTCAACTTTCAAAT
CTCAAACTTGAACAAATGGAAGAAAATATCCGTAAGGATACAATGGCTACAATGGCAGTCAATACGCTTTCTTATTCAGA
GATGAAGGCTGTTAAAGCGATTATTGAAGAGCTTGATGGTGAAGAAGGTCATGTCATTGCTTCTGTCATTGCTGACAAAA
TTGGGATTACACGTTCTGTCATTGTCAACGCTTTGCGTAAGCTTGAATCTGCGGGCGTTATCGAATCTCGTTCGCTCGGT
ATGAAAGGAACTTACCTTAAAGTTCTCAACACAGGTTTGTTTGACAAACTTGCTGGACGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

97.328

100

0.973
  codY Bacillus subtilis subsp. subtilis str. 168

47.451

97.328

0.462

Multiple sequence alignment