Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FLK62_RS07225 | Genome accession | NZ_CP041334 |
| Coordinates | 1448767..1449264 (-) | Length | 165 a.a. |
| NCBI ID | WP_149350935.1 | Uniprot ID | A0A859IGD1 |
| Organism | Glaesserella parasuis strain HPS412 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1443767..1454264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLK62_RS07195 (FLK62_07290) | argF | 1443956..1444966 (-) | 1011 | WP_176444008.1 | ornithine carbamoyltransferase | - |
| FLK62_RS07200 (FLK62_07295) | - | 1445113..1445391 (+) | 279 | WP_075605583.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FLK62_RS07205 (FLK62_07300) | - | 1445402..1445674 (+) | 273 | WP_005712616.1 | HigA family addiction module antitoxin | - |
| FLK62_RS07210 (FLK62_07305) | rhlB | 1445738..1446958 (+) | 1221 | WP_038513975.1 | ATP-dependent RNA helicase RhlB | - |
| FLK62_RS07215 (FLK62_07310) | - | 1446968..1447276 (+) | 309 | Protein_1404 | helicase HerA-like domain-containing protein | - |
| FLK62_RS07220 (FLK62_07315) | - | 1447348..1448562 (-) | 1215 | WP_021114868.1 | ATP-binding protein | - |
| FLK62_RS07225 (FLK62_07320) | ssb | 1448767..1449264 (-) | 498 | WP_149350935.1 | single-stranded DNA-binding protein | Machinery gene |
| FLK62_RS07230 (FLK62_07325) | uvrA | 1449567..1452395 (+) | 2829 | WP_176443697.1 | excinuclease ABC subunit UvrA | - |
| FLK62_RS07235 (FLK62_07330) | - | 1452480..1452863 (+) | 384 | WP_176443698.1 | YacL family protein | - |
| FLK62_RS07240 (FLK62_07335) | - | 1452829..1453080 (+) | 252 | WP_010786783.1 | LysR substrate-binding domain-containing protein | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18237.14 Da Isoelectric Point: 5.2691
>NTDB_id=371282 FLK62_RS07225 WP_149350935.1 1448767..1449264(-) (ssb) [Glaesserella parasuis strain HPS412]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGGGWNQAPVQTNFNGGNATRPQPAQKPAAQAEPTMDNFD
DDIPF
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGGGWNQAPVQTNFNGGNATRPQPAQKPAAQAEPTMDNFD
DDIPF
Nucleotide
Download Length: 498 bp
>NTDB_id=371282 FLK62_RS07225 WP_149350935.1 1448767..1449264(-) (ssb) [Glaesserella parasuis strain HPS412]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTCCAAAT
GCTAGATAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTGGTGGCTGGAACCAAGCACCAGTGCAAACCAACT
TCAACGGAGGCAACGCAACCAGACCGCAACCAGCCCAAAAACCTGCGGCTCAAGCAGAACCAACAATGGATAATTTTGAT
GATGATATTCCCTTCTAA
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTTTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTCCAAAT
GCTAGATAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTGGTGGCTGGAACCAAGCACCAGTGCAAACCAACT
TCAACGGAGGCAACGCAACCAGACCGCAACCAGCCCAAAAACCTGCGGCTCAAGCAGAACCAACAATGGATAATTTTGAT
GATGATATTCCCTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
90 |
100 |
0.982 |
| ssb | Vibrio cholerae strain A1552 |
53.591 |
100 |
0.588 |
| ssb | Neisseria gonorrhoeae MS11 |
43.931 |
100 |
0.461 |
| ssb | Neisseria meningitidis MC58 |
43.353 |
100 |
0.455 |