Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FI644_RS16390 Genome accession   NZ_CP041305
Coordinates   3279127..3281493 (+) Length   788 a.a.
NCBI ID   WP_142108612.1    Uniprot ID   -
Organism   Cytobacillus solani strain 5L6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3274127..3286493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FI644_RS16375 - 3275050..3275346 (+) 297 WP_053477141.1 post-transcriptional regulator -
  FI644_RS16380 secDF 3275566..3277827 (+) 2262 WP_142108610.1 protein translocase subunit SecDF -
  FI644_RS16385 - 3277952..3278851 (+) 900 WP_142108611.1 cation diffusion facilitator family transporter -
  FI644_RS16390 recJ 3279127..3281493 (+) 2367 WP_142108612.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FI644_RS16395 - 3281484..3281996 (+) 513 WP_053477137.1 adenine phosphoribosyltransferase -
  FI644_RS16400 - 3282229..3284427 (+) 2199 WP_053477136.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  FI644_RS16405 dtd 3284440..3284880 (+) 441 WP_142108613.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88690.51 Da        Isoelectric Point: 4.9971

>NTDB_id=371166 FI644_RS16390 WP_142108612.1 3279127..3281493(+) (recJ) [Cytobacillus solani strain 5L6]
MLHSKTRWIVRNSDEEKENLLVQELNITPLVASLLVNRGLETPELARHFLFDQKHEFHDPFLLTDMNAAVSRIKEAIENQ
EAILIFGDYDADGVTSTTVMMKTLQELGANVEFYIPNRFTEGYGPNIPAFQHAAEAGIKLIITVDTGIAAVNEAKAAKEL
GLDLIITDHHEPGPELPEALAIIHPKLENSEYPFRDLAGVGVAFKLAHALLGRVPEHLLEIAAIGTIADLVSLKGENRLI
VKKGIKKLQLTSNVGLKALLKLNKVEPDSINEETIGFLIAPRLNAAGRLESADPAVDLLLTEDSLEAEVIAEEIEQLNKD
RKSLVNEITEQAIREVEEKYPVTDNAVLVIGKEGWNAGVIGIVASKLVDKFYRPAIVLSYDVEKGLAKGSARSIAGFDLF
KNLSDCREILPHFGGHPMAAGMTLKLDDVNELRSRLNTAAKDQLSEEDFIPVTQLDGEIALHDIHLSSLEELQMLSPYGM
DNPKPKIMIKNANISAMRKIGSDQNHLKMTIENDGHTLDGVGFGLGSLFEHISPSSQISVIGELSINEWNNIRKPQMFLQ
DIAIDAWQLFDVRGVKRLESLVELIPKDRSKWIVFNQENMSKFQRYTNDHLITVSSEEEASALFIEKENVILIDLPDSKE
ILAAVFAGKKPARVYAHFYNEKDAYFSTIPTRDHFKWFYALLVKKGPFDLRKYGDDIAKFKGWSRQTIDFMSKVFFELDF
VKIENGFISVNKATQKRDLTDSLTYQKVLAQYTLERDMVYSSYQQLKRWFDEVIQGSVKYEEEMKEWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=371166 FI644_RS16390 WP_142108612.1 3279127..3281493(+) (recJ) [Cytobacillus solani strain 5L6]
ATGTTACATTCAAAAACACGATGGATTGTTCGGAATTCAGATGAAGAAAAGGAAAATCTGCTTGTACAAGAATTAAATAT
AACGCCTCTCGTGGCTTCGCTCCTTGTTAATCGTGGATTAGAAACTCCGGAATTAGCACGGCATTTTTTATTTGATCAAA
AGCATGAATTTCACGATCCTTTTTTATTAACAGATATGAATGCTGCGGTATCAAGAATAAAAGAGGCAATCGAGAATCAG
GAAGCTATATTAATATTCGGTGATTATGACGCAGATGGTGTAACAAGTACGACTGTGATGATGAAGACTCTTCAAGAGCT
TGGTGCGAATGTAGAATTTTACATACCAAACCGCTTTACAGAAGGGTATGGACCAAATATACCAGCTTTTCAGCATGCAG
CAGAAGCAGGTATTAAACTGATTATTACCGTTGATACAGGCATAGCTGCTGTAAATGAGGCGAAGGCCGCCAAAGAGCTT
GGGCTTGATCTTATTATTACTGACCATCATGAACCAGGTCCTGAGTTGCCTGAAGCATTGGCAATCATTCACCCGAAACT
TGAAAATAGCGAATATCCTTTCCGTGATTTAGCTGGTGTAGGTGTAGCATTTAAATTAGCCCATGCTCTGTTAGGCAGGG
TGCCTGAACATTTGCTTGAAATTGCTGCAATCGGAACAATTGCAGATCTTGTATCTCTAAAAGGAGAAAATCGCTTAATT
GTTAAAAAAGGGATTAAAAAGCTTCAATTGACTTCAAATGTCGGTTTAAAAGCATTATTAAAATTAAATAAAGTAGAACC
CGATTCAATAAATGAAGAAACAATTGGTTTTCTAATTGCTCCTCGCTTGAATGCGGCAGGAAGATTGGAAAGTGCTGACC
CTGCAGTTGATTTGCTGTTAACGGAAGATAGTCTTGAAGCTGAAGTAATTGCAGAAGAAATTGAGCAATTAAATAAGGAT
CGAAAGTCTTTAGTCAATGAAATTACAGAGCAGGCCATTCGTGAAGTTGAAGAAAAATATCCAGTGACTGATAATGCTGT
TCTTGTCATTGGAAAAGAAGGCTGGAATGCTGGGGTAATTGGAATTGTCGCTTCAAAGCTCGTAGATAAATTCTATCGGC
CTGCCATTGTACTAAGCTATGATGTAGAAAAGGGTCTTGCTAAAGGATCTGCTAGGAGTATAGCAGGTTTTGACCTTTTT
AAAAATCTGTCAGATTGCAGAGAGATTTTGCCTCATTTTGGCGGACATCCGATGGCAGCAGGGATGACATTGAAACTTGA
TGATGTGAATGAGCTTCGGAGCAGACTCAATACTGCTGCAAAAGATCAGTTATCAGAGGAGGATTTTATTCCTGTAACCC
AACTGGATGGGGAAATCGCATTACATGATATTCATTTGTCTTCTTTAGAAGAACTGCAAATGCTCTCTCCATATGGAATG
GATAACCCAAAACCAAAAATAATGATTAAAAATGCCAATATATCTGCAATGCGTAAGATTGGTTCGGATCAGAATCATTT
GAAAATGACGATTGAAAATGATGGTCACACATTAGATGGAGTCGGTTTTGGACTTGGTTCATTATTCGAACATATTTCTC
CAAGTTCGCAAATTTCGGTTATCGGGGAATTATCGATTAATGAATGGAATAATATTCGCAAACCGCAAATGTTTCTCCAA
GATATAGCTATTGATGCATGGCAGCTATTTGATGTTAGGGGAGTAAAGCGCCTTGAAAGTTTAGTCGAGCTCATCCCGAA
GGATCGTTCGAAATGGATTGTATTTAATCAAGAGAATATGAGTAAATTTCAAAGATATACAAACGATCATTTAATAACGG
TAAGTTCAGAGGAGGAAGCCTCTGCACTATTCATAGAGAAAGAAAATGTGATTTTGATCGATCTTCCTGACTCTAAGGAA
ATATTGGCTGCAGTATTTGCCGGAAAAAAGCCAGCTAGAGTGTATGCGCATTTTTATAATGAAAAGGATGCGTATTTTAG
TACGATTCCAACTAGAGATCATTTCAAATGGTTCTATGCCTTATTAGTAAAGAAAGGACCTTTTGATCTTAGAAAATATG
GAGATGACATTGCTAAATTTAAGGGCTGGAGCAGACAAACAATTGACTTCATGTCAAAGGTGTTTTTTGAACTCGATTTT
GTTAAAATAGAAAATGGATTCATTTCAGTTAATAAAGCTACACAAAAACGTGATTTAACTGATTCATTAACATACCAGAA
GGTGCTGGCACAGTATACACTTGAAAGGGATATGGTGTATTCTTCCTATCAGCAATTAAAAAGATGGTTTGACGAAGTGA
TCCAAGGTTCTGTGAAATATGAGGAGGAAATGAAAGAATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-439)

RecJ OB domain (RecJ_OB)

(456-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.414

99.619

0.552

Multiple sequence alignment