Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   C8250_RS17670 Genome accession   NZ_CP048835
Coordinates   3911768..3913984 (-) Length   738 a.a.
NCBI ID   WP_138355074.1    Uniprot ID   -
Organism   Streptomyces sp. So13.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3906768..3918984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C8250_RS17650 (C8250_017665) - 3907559..3908149 (+) 591 WP_244809178.1 TetR/AcrR family transcriptional regulator -
  C8250_RS17655 (C8250_017670) - 3908178..3908933 (-) 756 WP_138355077.1 VTT domain-containing protein -
  C8250_RS17660 (C8250_017675) - 3909152..3909901 (-) 750 WP_138355076.1 SDR family oxidoreductase -
  C8250_RS17665 (C8250_017680) - 3910354..3911643 (-) 1290 WP_138355075.1 citrate synthase -
  C8250_RS17670 (C8250_017685) recD/recD2/recDB 3911768..3913984 (-) 2217 WP_138355074.1 ATP-dependent RecD-like DNA helicase Machinery gene
  C8250_RS17675 (C8250_017690) - 3914182..3914430 (+) 249 WP_138355073.1 class F sortase -
  C8250_RS17680 (C8250_017695) - 3914515..3914952 (+) 438 WP_138355072.1 DUF937 domain-containing protein -
  C8250_RS17685 (C8250_017700) - 3915173..3916024 (-) 852 WP_138355119.1 sugar phosphate isomerase/epimerase family protein -
  C8250_RS17690 (C8250_017705) - 3916099..3917265 (-) 1167 WP_244809179.1 dihydrodipicolinate synthase family protein -
  C8250_RS17695 (C8250_017710) - 3917262..3918413 (-) 1152 WP_138355071.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79510.12 Da        Isoelectric Point: 6.7360

>NTDB_id=370895 C8250_RS17670 WP_138355074.1 3911768..3913984(-) (recD/recD2/recDB) [Streptomyces sp. So13.3]
MGDARLAVLEAVLERITYANEDNGYTVARVDTGRGAGDLLTVVGALLGAQPGESLRMEGRWGSHPQYGKQFTVENYTTVL
PATIQGIRRYLGSGLIKGIGPKIADRIVEHFGTDTLDVIEGAPKRLIEVPGLGPKRTRMIAVAWEEQKAIKEVMVFLQGV
GVSTSIAVRIYKNYGDASISVVKNQPYRLAADVWGIGFLTADRIAQAVGIPHDSPERVKAGLQYALSQATDSGNCFLPEE
QLLSDSVKLLQVDAGLVIDCLAELVGEEGVVRESVPDPEGGDPVRAVYLVPFHRAEISLAGQLLRLLRGPEDRLPLFQDV
QWDKALSWLAGRTGADLAPEQQQAVRLALTERVAVLTGGPGCGKSFTVRSVVTLAQAKKAKVVLAAPTGRAAKRLAELTG
MEASTVHRLLELKPGGDAAYDKDRPLDADLVVVDEASMLDLLLANKLAKAVPPGAHLLFVGDVDQLPSVGAGEVLRDLLA
PGSPVPAVRLTRIFRQAQQSGVVTNAHRINSGVPPITQGLPDFFLFPEEDTEEAGRLTVEVAARRIPAKFGLDPRRDIQV
LAPMHRGPAGAGALNGLLQQAITPARPDLPERRFGGRTFRVGDKVTQIRNNYEKGESGVFNGTVGVVTALDTVEQKLTVL
TDEDEEIPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKRLVVLVGSRRAIAQAVRTV
SAGRRFTALDHRLAQGAK

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=370895 C8250_RS17670 WP_138355074.1 3911768..3913984(-) (recD/recD2/recDB) [Streptomyces sp. So13.3]
ATGGGGGACGCGCGACTCGCCGTGCTCGAAGCCGTCCTGGAGCGGATCACCTACGCCAACGAGGACAACGGCTACACGGT
CGCGCGGGTCGACACGGGCCGCGGCGCCGGCGATCTGCTGACCGTGGTCGGCGCCCTGTTGGGCGCGCAGCCGGGCGAAT
CGCTGCGCATGGAGGGCCGTTGGGGCTCCCATCCGCAGTACGGCAAGCAGTTCACCGTGGAGAACTACACCACCGTCCTG
CCCGCGACGATCCAGGGCATCCGCCGATACCTCGGTTCGGGGCTGATCAAGGGGATCGGGCCCAAGATCGCCGACCGGAT
CGTGGAGCACTTCGGCACCGACACCCTGGATGTCATCGAAGGGGCGCCGAAACGGCTGATCGAAGTGCCGGGGCTCGGGC
CGAAGCGGACCAGGATGATCGCCGTCGCCTGGGAGGAGCAGAAAGCGATCAAGGAGGTGATGGTCTTCCTCCAGGGAGTG
GGGGTGTCCACGTCCATCGCGGTGCGCATCTACAAGAACTACGGCGACGCGTCGATCTCCGTGGTGAAGAACCAGCCTTA
CCGGCTGGCCGCCGATGTGTGGGGCATCGGATTCCTGACCGCCGACCGGATCGCCCAGGCGGTGGGGATACCCCACGACA
GCCCGGAGCGGGTCAAGGCGGGGCTCCAGTACGCGCTGTCGCAGGCCACCGACAGCGGGAACTGCTTCCTGCCCGAGGAA
CAGCTGCTCTCCGACTCCGTCAAGCTGCTGCAGGTGGACGCCGGACTGGTGATCGACTGCCTCGCGGAGCTGGTGGGCGA
GGAGGGCGTGGTCCGGGAGTCGGTACCGGATCCGGAGGGCGGCGATCCGGTGCGGGCCGTGTACCTGGTGCCGTTCCACC
GGGCGGAGATCTCGCTGGCCGGCCAACTGCTCAGACTGCTGCGCGGGCCGGAGGACCGGCTGCCGCTGTTCCAGGACGTC
CAGTGGGACAAAGCCCTGTCCTGGCTGGCCGGCCGCACGGGAGCGGATCTGGCGCCCGAGCAGCAGCAGGCGGTGCGGTT
GGCGCTGACCGAAAGGGTCGCGGTGCTCACCGGCGGCCCCGGCTGCGGCAAGTCGTTCACGGTGCGTTCGGTGGTGACTC
TGGCGCAGGCGAAGAAGGCCAAGGTGGTGCTGGCCGCGCCGACCGGCCGCGCCGCCAAACGGCTGGCCGAGCTGACCGGC
ATGGAGGCGTCGACCGTGCACCGGCTGCTGGAGCTCAAGCCGGGCGGGGACGCGGCCTACGACAAGGACCGGCCGCTGGA
CGCGGACCTGGTGGTCGTGGACGAGGCCTCGATGCTGGACTTGCTGCTCGCGAACAAGCTGGCCAAGGCGGTGCCGCCGG
GCGCGCACCTGTTGTTCGTCGGGGATGTGGACCAGCTGCCGAGCGTCGGCGCGGGCGAGGTGCTGCGGGATCTGCTGGCC
CCGGGCAGCCCGGTCCCGGCGGTGCGGCTCACCCGGATCTTCCGCCAGGCCCAGCAGTCGGGCGTGGTGACCAACGCCCA
CCGGATCAATTCGGGAGTCCCGCCGATCACCCAGGGGCTCCCCGACTTCTTCCTCTTCCCCGAGGAGGACACCGAGGAGG
CGGGTCGGCTGACGGTGGAGGTGGCGGCCCGGCGGATCCCTGCCAAGTTCGGCCTCGACCCGCGCCGCGACATCCAGGTG
CTCGCGCCCATGCACCGGGGCCCGGCAGGCGCCGGCGCGCTGAACGGCCTCCTTCAGCAGGCCATCACCCCGGCCCGGCC
GGATCTCCCGGAGCGCAGGTTCGGCGGCCGCACGTTCCGTGTCGGCGACAAGGTCACCCAGATCCGCAACAACTACGAGA
AGGGGGAGAGCGGCGTCTTCAACGGCACGGTCGGGGTGGTCACCGCGCTCGACACCGTCGAACAGAAGCTCACCGTGCTC
ACGGATGAGGACGAAGAGATTCCGTACGACTTCGACGAGCTGGACGAGCTGGCCCACGCGTACGCCGTGACGATCCACCG
CTCCCAGGGCAGCGAGTACCCGGCCGTGGTGATCCCGGTCACCACGGGGGCATGGATGATGTTGCAGCGGAATCTGTTGT
ATACGGCTGTTACCAGGGCGAAACGCCTGGTGGTTCTGGTCGGGTCGCGCAGGGCGATAGCCCAGGCGGTACGCACCGTC
TCGGCCGGTCGGCGCTTCACCGCCCTCGATCACCGGCTCGCTCAGGGCGCGAAATAG

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-639)

Helix-hairpin-helix domain (HHH_5)

(96-145)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-707)

AAA domain (AAA_30)

(337-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.85

100

0.363

Multiple sequence alignment