Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   BMD_RS22310 Genome accession   NC_014103
Coordinates   4434541..4436898 (-) Length   785 a.a.
NCBI ID   WP_013059293.1    Uniprot ID   A0A1Q8V101
Organism   Priestia megaterium DSM 319     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4429541..4441898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMD_RS22295 (BMD_4597) alaS 4429851..4432484 (-) 2634 WP_013085088.1 alanine--tRNA ligase -
  BMD_RS22300 (BMD_4599) - 4432873..4433934 (-) 1062 WP_013059290.1 AI-2E family transporter -
  BMD_RS26310 (BMD_4600) - 4434048..4434182 (-) 135 WP_013059291.1 YrzQ family protein -
  BMD_RS22305 (BMD_4601) - 4434208..4434399 (-) 192 WP_013059292.1 hypothetical protein -
  BMD_RS22310 (BMD_4602) recD2 4434541..4436898 (-) 2358 WP_013059293.1 ATP-dependent RecD-like DNA helicase Machinery gene
  BMD_RS22315 (BMD_4603) - 4436923..4437582 (-) 660 WP_013085089.1 lipopolysaccharide assembly protein LapB -
  BMD_RS22320 (BMD_4604) mnmA 4437740..4438852 (-) 1113 WP_013085090.1 tRNA 2-thiouridine(34) synthase MnmA -
  BMD_RS22325 (BMD_4605) - 4438959..4440101 (-) 1143 WP_013085091.1 cysteine desulfurase family protein -
  BMD_RS22330 (BMD_4606) cymR 4440125..4440541 (-) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88832.25 Da        Isoelectric Point: 5.0673

>NTDB_id=37052 BMD_RS22310 WP_013059293.1 4434541..4436898(-) (recD2) [Priestia megaterium DSM 319]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=37052 BMD_RS22310 WP_013059293.1 4434541..4436898(-) (recD2) [Priestia megaterium DSM 319]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCGATTGTAACCGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTCA
CAGGTTATTTTCCTAAGCTGAATGAAGATGAAGTATACACGTTTTACGGAGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTATCTAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAACATTGTGGACGCTCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTTGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGCTTTAGCAGAGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATATGTCATTGAGCAAGAA
TGCAATCAAATGGGGCATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGGAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGATAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCGGAATCAGAATTCTTATTGGCTCTGGGTGAACTAGAAGAGCGGTTAGACGTGCAATATGCACCGTC
TCAGCGCAAGGGTATACAAACCGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACAGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTTTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGACTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCCACGGGACGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCAGTTACGAT
TCACCGATTATTAAAATGGAACGGACAAGAAGGATTTGATCATAATGAGGAGAATCCAATTGACGGAAAGTTATTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAATCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGATCAGCTTCCGTCAGTAGGTCCGGGCCAGGTGTTAAAAGATTTGCTGAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACAGGCAAGCGGAAGGGTCGTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCAAGGCAGCAAGGAGATCGTTCCTTTATTCGTTGTCAAGGACAGCACATTACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTTTAGCTCCTATGTATAAAGGTCCTGC
AGGTATTGATAAGCTGAATGAAGTTCTTCAGGAATTATTCAACCCGGCTTCTGAGCAACGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCGGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTTAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGTGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGAAATGAAGACAGCGTTCGCCAAAC
GAATTTACAGCCCTTGCTTCGAGAAAGCTTGGATAATGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q8V101

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637

Multiple sequence alignment