Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   G3M73_RS15965 Genome accession   NZ_CP048605
Coordinates   3449580..3450344 (-) Length   254 a.a.
NCBI ID   WP_001136201.1    Uniprot ID   -
Organism   Escherichia coli strain PapRG-06-5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3444580..3455344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M73_RS15935 (G3M73_15935) - 3445214..3446572 (-) 1359 WP_001308116.1 PTS galactitol transporter subunit IIC -
  G3M73_RS15940 (G3M73_15940) - 3446649..3446930 (-) 282 WP_163425358.1 PTS sugar transporter subunit IIB -
  G3M73_RS15945 (G3M73_15945) - 3446927..3447400 (-) 474 WP_001161553.1 PTS sugar transporter subunit IIA -
  G3M73_RS15950 (G3M73_15950) - 3447425..3448171 (-) 747 WP_001603991.1 GntR family transcriptional regulator -
  G3M73_RS15955 (G3M73_15955) nikR 3448370..3448771 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  G3M73_RS15960 (G3M73_15960) nikE 3448777..3449583 (-) 807 WP_000173673.1 nickel import ATP-binding protein NikE -
  G3M73_RS15965 (G3M73_15965) amiE 3449580..3450344 (-) 765 WP_001136201.1 nickel import ATP-binding protein NikD Regulator
  G3M73_RS15970 (G3M73_15970) nikC 3450344..3451177 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  G3M73_RS15975 (G3M73_15975) nikB 3451174..3452118 (-) 945 WP_000947062.1 nickel ABC transporter permease subunit NikB -
  G3M73_RS15980 (G3M73_15980) nikA 3452118..3453692 (-) 1575 WP_000953370.1 nickel ABC transporter substrate-binding protein -
  G3M73_RS15985 (G3M73_15985) acpT 3453803..3454390 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26780.35 Da        Isoelectric Point: 6.2250

>NTDB_id=369971 G3M73_RS15965 WP_001136201.1 3449580..3450344(-) (amiE) [Escherichia coli strain PapRG-06-5]
MPQQIELRDIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLRTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=369971 G3M73_RS15965 WP_001136201.1 3449580..3450344(-) (amiE) [Escherichia coli strain PapRG-06-5]
ATGCCGCAACAGATTGAACTGCGCGATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGGCGCTGGGAATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTACGCACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTTTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAGGCACCGGGGATGCTGCTGGTCACCCATGATATGGGCGTAGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTCGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

42

98.425

0.413
  amiE Streptococcus thermophilus LMD-9

42

98.425

0.413
  amiE Streptococcus salivarius strain HSISS4

40.8

98.425

0.402