Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D073_RS08210 Genome accession   NZ_CP041145
Coordinates   1606638..1607417 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain At1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1601638..1612417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D073_RS08190 (D073_1556) trmFO 1602325..1603632 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D073_RS08195 (D073_1557) xerC 1603702..1604619 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  D073_RS08200 (D073_1558) hslV 1604635..1605180 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  D073_RS08205 (D073_1559) hslU 1605197..1606600 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  D073_RS08210 (D073_1560) codY 1606638..1607417 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D073_RS08215 (D073_1561) flgB 1607771..1608160 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  D073_RS08220 (D073_1562) flgC 1608160..1608612 (+) 453 WP_020955818.1 flagellar basal body rod protein FlgC -
  D073_RS08225 (D073_1563) fliE 1608623..1608943 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  D073_RS08230 (D073_1564) fliF 1608986..1610596 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  D073_RS08235 (D073_1565) fliG 1610609..1611625 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  D073_RS08240 (D073_1566) fliH 1611618..1612373 (+) 756 WP_020955819.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=369818 D073_RS08210 WP_003154263.1 1606638..1607417(+) (codY) [Bacillus velezensis strain At1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=369818 D073_RS08210 WP_003154263.1 1606638..1607417(+) (codY) [Bacillus velezensis strain At1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCCGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment