Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   G3M71_RS01155 Genome accession   NZ_CP048603
Coordinates   259610..260374 (-) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain ChlosBP-23-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 254610..265374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M71_RS01140 (G3M71_01140) yhhJ 257267..258391 (+) 1125 WP_001442059.1 ABC transporter permease -
  G3M71_RS01145 (G3M71_01145) nikR 258400..258801 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  G3M71_RS01150 (G3M71_01150) nikE 258807..259613 (-) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  G3M71_RS01155 (G3M71_01155) amiE 259610..260374 (-) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  G3M71_RS01160 (G3M71_01160) nikC 260374..261207 (-) 834 WP_001008959.1 nickel ABC transporter permease subunit NikC -
  G3M71_RS01165 (G3M71_01165) nikB 261204..262148 (-) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  G3M71_RS01170 (G3M71_01170) nikA 262148..263722 (-) 1575 WP_152633662.1 nickel ABC transporter substrate-binding protein -
  G3M71_RS01175 (G3M71_01175) acpT 263833..264420 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=369760 G3M71_RS01155 WP_001136232.1 259610..260374(-) (amiE) [Escherichia coli strain ChlosBP-23-1]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=369760 G3M71_RS01155 WP_001136232.1 259610..260374(-) (amiE) [Escherichia coli strain ChlosBP-23-1]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGAAGTGGCAGCGGGAAGTCTCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment