Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FIM06_RS08105 Genome accession   NZ_CP041144
Coordinates   1596022..1596801 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UCMB5044     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591022..1601801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS08085 (FIM06_1530) trmFO 1591709..1593016 (+) 1308 WP_105937728.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FIM06_RS08090 (FIM06_1531) xerC 1593086..1594003 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  FIM06_RS08095 (FIM06_1532) hslV 1594019..1594564 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  FIM06_RS08100 (FIM06_1533) hslU 1594581..1595984 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  FIM06_RS08105 (FIM06_1534) codY 1596022..1596801 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FIM06_RS08110 (FIM06_1535) flgB 1597155..1597544 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  FIM06_RS08115 (FIM06_1536) flgC 1597544..1597996 (+) 453 WP_101669540.1 flagellar basal body rod protein FlgC -
  FIM06_RS08120 (FIM06_1537) fliE 1598007..1598327 (+) 321 WP_045207408.1 flagellar hook-basal body complex protein FliE -
  FIM06_RS08125 (FIM06_1538) fliF 1598370..1599980 (+) 1611 WP_007611422.1 flagellar basal-body MS-ring/collar protein FliF -
  FIM06_RS08130 (FIM06_1539) fliG 1599993..1601009 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  FIM06_RS08135 (FIM06_1540) fliH 1601002..1601757 (+) 756 WP_105937727.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=369743 FIM06_RS08105 WP_003154263.1 1596022..1596801(+) (codY) [Bacillus velezensis strain UCMB5044]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=369743 FIM06_RS08105 WP_003154263.1 1596022..1596801(+) (codY) [Bacillus velezensis strain UCMB5044]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGCGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment