Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   G3M67_RS04170 Genome accession   NZ_CP048601
Coordinates   882702..883475 (-) Length   257 a.a.
NCBI ID   WP_163524753.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 27     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 877702..888475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M67_RS04135 (G3M67_04135) - 877759..878919 (+) 1161 WP_123946483.1 HP1165 family MFS efflux transporter -
  G3M67_RS04140 (G3M67_04140) - 878926..879900 (-) 975 WP_163524747.1 NAD(P)/FAD-dependent oxidoreductase -
  G3M67_RS04145 (G3M67_04145) ccoS 879930..880127 (-) 198 WP_001090947.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  G3M67_RS04150 (G3M67_04150) - 880253..880834 (+) 582 WP_163524749.1 DedA family protein -
  G3M67_RS04155 (G3M67_04155) - 880926..881420 (+) 495 WP_000516051.1 flavodoxin -
  G3M67_RS04160 (G3M67_04160) ybeY 881476..881898 (+) 423 WP_163524751.1 rRNA maturation RNase YbeY -
  G3M67_RS04165 (G3M67_04165) - 882142..882675 (-) 534 WP_000549892.1 Fic/DOC family protein -
  G3M67_RS04170 (G3M67_04170) proC 882702..883475 (-) 774 WP_163524753.1 pyrroline-5-carboxylate reductase Machinery gene
  G3M67_RS04175 (G3M67_04175) hopL 883489..887190 (-) 3702 WP_163524755.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28314.06 Da        Isoelectric Point: 8.8717

>NTDB_id=369742 G3M67_RS04170 WP_163524753.1 882702..883475(-) (proC) [Helicobacter pylori strain GCT 27]
MEILQFIGYGNMAQAILEGSHEILSKRFILEITGRNPEKIAPFLQEKNIQAQIVPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVNFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEEQVD
SSVATNGSALAFLSLVASSLKDAGIREGLNARDSLELVKMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=369742 G3M67_RS04170 WP_163524753.1 882702..883475(-) (proC) [Helicobacter pylori strain GCT 27]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATCTTAGAAGGCTCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAAATCACCGGAAGAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTATTGTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAGGCTAAAAGCGTTTTGAGCGCGTTAGCCGGGGTAAATTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCCAACATTGCGAGCAAGTTCGCCCTTTCTTCTACAGCGGTGTGCGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGCAATGAAGAGCAGGTTGAT
TCTAGCGTAGCGACAAACGGGAGCGCGCTTGCGTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGACGCTGGTATTAGGGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGAAGATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CAGAGATGATCATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTCATCAAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366

Multiple sequence alignment