Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   FIM06_RS05385 Genome accession   NZ_CP041144
Coordinates   1043068..1043646 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain UCMB5044     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1038068..1048646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIM06_RS20625 - 1038568..1039083 (-) 516 WP_369878811.1 methyl-accepting chemotaxis protein -
  FIM06_RS20630 - 1039327..1040079 (-) 753 Protein_984 protoglobin domain-containing protein -
  FIM06_RS05370 (FIM06_1012) - 1039983..1041506 (-) 1524 WP_105937903.1 FAD-dependent oxidoreductase -
  FIM06_RS05375 (FIM06_1013) - 1041631..1042488 (+) 858 WP_105937902.1 SDR family oxidoreductase -
  FIM06_RS05380 (FIM06_1014) - 1042519..1042752 (-) 234 WP_032874382.1 IDEAL domain-containing protein -
  FIM06_RS05385 (FIM06_1015) comK 1043068..1043646 (+) 579 WP_003155179.1 competence protein ComK Regulator
  FIM06_RS05390 (FIM06_1016) - 1043792..1044160 (+) 369 WP_012117235.1 iron chaperone -
  FIM06_RS05395 (FIM06_1017) - 1044187..1044558 (+) 372 WP_140957272.1 iron chaperone -
  FIM06_RS05400 (FIM06_1018) - 1044681..1045190 (+) 510 WP_140957274.1 MepB family protein -
  FIM06_RS05405 (FIM06_1019) - 1045419..1046129 (-) 711 WP_082997804.1 YrpD family protein -
  FIM06_RS05410 (FIM06_1020) - 1046325..1046594 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  FIM06_RS05415 (FIM06_1021) - 1046627..1046944 (-) 318 WP_003155166.1 YbjQ family protein -
  FIM06_RS05420 (FIM06_1022) - 1046986..1048455 (-) 1470 WP_105937901.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=369728 FIM06_RS05385 WP_003155179.1 1043068..1043646(+) (comK) [Bacillus velezensis strain UCMB5044]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=369728 FIM06_RS05385 WP_003155179.1 1043068..1043646(+) (comK) [Bacillus velezensis strain UCMB5044]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTATGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACAATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment