Detailed information NTG0369669

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: G3M69_RS05775
• Genome accession: NZ_CP048599
• Coordinates: 1217983..1219032 (+)
• Length: 349 a.a.
• NCBI ID: WP_163563245.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain GCT 97
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1212983..1224032

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3M69_RS05760 (G3M69_05760)	-	1213928..1215133 (-)	1206	WP_163563242.1	DUF874 family protein	-
G3M69_RS05765 (G3M69_05765)	asd	1215566..1216606 (-)	1041	WP_163563243.1	aspartate-semialdehyde dehydrogenase	-
G3M69_RS05770 (G3M69_05770)	hisS	1216593..1217921 (-)	1329	WP_163563244.1	histidine--tRNA ligase	-
G3M69_RS05775 (G3M69_05775)	waaF	1217983..1219032 (+)	1050	WP_163563245.1	lipopolysaccharide heptosyltransferase II	Regulator
G3M69_RS08240	-	1219409..1219486 (-)	78	Protein_1161	type II restriction endonuclease	-
G3M69_RS05780 (G3M69_05780)	-	1219542..1219745 (-)	204	WP_001886655.1	hypothetical protein	-
G3M69_RS05785 (G3M69_05785)	-	1219745..1220617 (-)	873	WP_163563246.1	class 1 fructose-bisphosphatase	-
G3M69_RS05790 (G3M69_05790)	rpe	1220688..1221341 (+)	654	WP_000861478.1	ribulose-phosphate 3-epimerase	-
G3M69_RS05795 (G3M69_05795)	-	1221319..1222182 (+)	864	WP_097715536.1	3'-5' exonuclease	-
G3M69_RS05800 (G3M69_05800)	hcpG	1222221..1223198 (-)	978	WP_163563247.1	Sel1-like repeat protein HcpG	-
G3M69_RS05805 (G3M69_05805)	-	1223336..1223632 (-)	297	WP_000539097.1	hypothetical protein	-

Sequence

Protein

• Length: 349 a.a.
• Molecular weight: 39471.15 Da
• Isoelectric Point: 9.3310

>NTDB_id=369669 G3M69_RS05775 WP_163563245.1 1217983..1219032(+) (waaF) [Helicobacter pylori strain GCT 97]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFVLVGPTITCELFKKDEKIEAVFIDDTKKSFFRLLATYKL
AQKIGRCDIAIALNSHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLEKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVAAALLEKGHEIYFFGAKEDTIVSEEILKSVKSLLKNPLLSH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCP
LKNEKNHLCMQSITPLEVLQAAHILLEEP

Nucleotide

• Length: 1050 bp

>NTDB_id=369669 G3M69_RS05775 WP_163563245.1 1217983..1219032(+) (waaF) [Helicobacter pylori strain GCT 97]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGCTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAACGCGTATTTTGTCTTAGTGGGCCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAGATAGAAGCCGTTTTCATAGACGACACCAAAAAATCCTTTTTCAGACTGCTAGCCACTTACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCTTTAAACAGCCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCGATAATGGCCGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTGTTTTCGCAATTTTTAGAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGATTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCGGCTTCTTATTACGCTGAAGTTGCGGCTGCTTTGTTGGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACACTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTATCCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATCTATTCATCACTAA
CGATAGCGGTCCCATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTGCACCTTGCAAGAAACGAGTTTGCCCT
TTAAAAAATGAAAAAAACCATTTGTGCATGCAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACATTCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (78-323)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	37.791	98.567	0.372