Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   D069_RS08110 Genome accession   NZ_CP041143
Coordinates   1596039..1596818 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain UCMB5007     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591039..1601818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D069_RS08090 (D069_1529) trmFO 1591726..1593033 (+) 1308 WP_105937728.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D069_RS08095 (D069_1530) xerC 1593103..1594020 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  D069_RS08100 (D069_1531) hslV 1594036..1594581 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  D069_RS08105 (D069_1532) hslU 1594598..1596001 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  D069_RS08110 (D069_1533) codY 1596039..1596818 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  D069_RS08115 (D069_1534) flgB 1597172..1597561 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  D069_RS08120 (D069_1535) flgC 1597561..1598013 (+) 453 WP_101669540.1 flagellar basal body rod protein FlgC -
  D069_RS08125 (D069_1536) fliE 1598024..1598344 (+) 321 WP_045207408.1 flagellar hook-basal body complex protein FliE -
  D069_RS08130 (D069_1537) fliF 1598387..1599997 (+) 1611 WP_007611422.1 flagellar basal-body MS-ring/collar protein FliF -
  D069_RS08135 (D069_1538) fliG 1600010..1601026 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  D069_RS08140 (D069_1539) fliH 1601019..1601774 (+) 756 WP_105937727.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=369669 D069_RS08110 WP_003154263.1 1596039..1596818(+) (codY) [Bacillus velezensis strain UCMB5007]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=369669 D069_RS08110 WP_003154263.1 1596039..1596818(+) (codY) [Bacillus velezensis strain UCMB5007]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGCGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment