Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   G3M69_RS05615 Genome accession   NZ_CP048599
Coordinates   1182049..1182822 (+) Length   257 a.a.
NCBI ID   WP_163563228.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 97     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1177049..1187822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M69_RS05610 (G3M69_05610) hopL 1178330..1182034 (+) 3705 WP_163563227.1 Hop family outer membrane protein HopL -
  G3M69_RS05615 (G3M69_05615) proC 1182049..1182822 (+) 774 WP_163563228.1 pyrroline-5-carboxylate reductase Machinery gene
  G3M69_RS08230 - 1182849..1183148 (+) 300 WP_001876668.1 cell filamentation protein Fic -
  G3M69_RS08235 - 1183177..1183377 (+) 201 WP_341534281.1 cAMP-induced cell filamentation protein -
  G3M69_RS05625 (G3M69_05625) ybeY 1183624..1184046 (-) 423 WP_163563229.1 rRNA maturation RNase YbeY -
  G3M69_RS05630 (G3M69_05630) - 1184102..1184596 (-) 495 WP_000516058.1 flavodoxin -
  G3M69_RS05635 (G3M69_05635) - 1184687..1185268 (-) 582 WP_147777480.1 DedA family protein -
  G3M69_RS05640 (G3M69_05640) ccoS 1185391..1185588 (+) 198 WP_001090947.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  G3M69_RS05645 (G3M69_05645) - 1185612..1186586 (+) 975 WP_163563230.1 NAD(P)/FAD-dependent oxidoreductase -
  G3M69_RS05650 (G3M69_05650) - 1186593..1187753 (-) 1161 WP_163563231.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28240.91 Da        Isoelectric Point: 7.2429

>NTDB_id=369668 G3M69_RS05615 WP_163563228.1 1182049..1182822(+) (proC) [Helicobacter pylori strain GCT 97]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGKNPEKIAPFLQEKNIQAQIMPYKDAIDIHQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVDFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASGLKDAGIREGLNARDSLELVEMSFKGFAKLLEKERPEVIIEQICTPKGATIEGLSVLEKKGV
RGAFIEACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=369668 G3M69_RS05615 WP_163563228.1 1182049..1182822(+) (proC) [Helicobacter pylori strain GCT 97]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATCACCGGAAAAAACCCTGAAAAAATCGCCCCTTTTTTACAAGAAAAAAACATTCAAGCCCAAATCA
TGCCTTACAAAGACGCTATTGATATACACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGCGCGTTAGCCGGGGTGGATTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCTAATATTGCGAGCAAATTCGCTCTATCTTCTACAGCGGTGTGTGAAAAATCACCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTCGCTTTTTTAAGCTTGGTAGCGAGCGGTTTGAAAGACGCCGGCATCAGAGA
GGGTTTGAACGCTAGAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAGGTGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAGAAGCTTGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.402

98.833

0.37

Multiple sequence alignment