Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | G3M69_RS00960 | Genome accession | NZ_CP048599 |
| Coordinates | 206068..206331 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177716.1 | Uniprot ID | O25204 |
| Organism | Helicobacter pylori strain GCT 97 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 201068..211331
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M69_RS00945 (G3M69_00945) | - | 201978..203114 (-) | 1137 | WP_163562754.1 | VirB8/TrbF family protein | - |
| G3M69_RS07955 | - | 203107..203247 (-) | 141 | WP_000789926.1 | hypothetical protein | - |
| G3M69_RS00950 (G3M69_00950) | comB4 | 203244..205820 (-) | 2577 | WP_163562755.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| G3M69_RS00955 (G3M69_00955) | - | 205820..206056 (-) | 237 | WP_108243306.1 | hypothetical protein | - |
| G3M69_RS00960 (G3M69_00960) | comB3 | 206068..206331 (-) | 264 | WP_001177716.1 | hypothetical protein | Machinery gene |
| G3M69_RS00965 (G3M69_00965) | - | 206343..206626 (-) | 284 | Protein_191 | TrbC/VirB2 family protein | - |
| G3M69_RS00970 (G3M69_00970) | - | 206614..207102 (-) | 489 | WP_163562756.1 | hypothetical protein | - |
| G3M69_RS00975 (G3M69_00975) | - | 207095..207325 (-) | 231 | WP_000189078.1 | hypothetical protein | - |
| G3M69_RS00980 (G3M69_00980) | - | 207328..208116 (-) | 789 | WP_205424853.1 | integrase | - |
| G3M69_RS08125 (G3M69_00985) | - | 208170..208349 (-) | 180 | Protein_195 | metal-dependent hydrolase | - |
| G3M69_RS08130 (G3M69_00990) | - | 208346..209479 (-) | 1134 | WP_163562757.1 | sulfatase-like hydrolase/transferase | - |
| G3M69_RS00995 (G3M69_00995) | - | 209682..210539 (-) | 858 | WP_000657593.1 | cytochrome c1 | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9970.83 Da Isoelectric Point: 5.7206
>NTDB_id=369644 G3M69_RS00960 WP_001177716.1 206068..206331(-) (comB3) [Helicobacter pylori strain GCT 97]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=369644 G3M69_RS00960 WP_001177716.1 206068..206331(-) (comB3) [Helicobacter pylori strain GCT 97]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATATTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |