Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   FJM75_RS06555 Genome accession   NZ_CP041063
Coordinates   1260180..1262450 (-) Length   756 a.a.
NCBI ID   WP_165996867.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1255180..1267450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS06535 - 1255408..1255671 (-) 264 WP_098444356.1 IreB family regulatory phosphoprotein -
  FJM75_RS06540 alaS 1255751..1258384 (-) 2634 WP_165996864.1 alanine--tRNA ligase -
  FJM75_RS06545 - 1258754..1259818 (-) 1065 WP_242688677.1 AI-2E family transporter -
  FJM75_RS06550 - 1259846..1260034 (-) 189 WP_098444358.1 hypothetical protein -
  FJM75_RS06555 recD2 1260180..1262450 (-) 2271 WP_165996867.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FJM75_RS06560 - 1262478..1263146 (-) 669 WP_159783397.1 tetratricopeptide repeat protein -
  FJM75_RS06565 mnmA 1263255..1264370 (-) 1116 WP_165996869.1 tRNA 2-thiouridine(34) synthase MnmA -
  FJM75_RS06570 - 1264415..1265557 (-) 1143 WP_165996870.1 cysteine desulfurase family protein -
  FJM75_RS06575 - 1265595..1266014 (-) 420 WP_160918687.1 Rrf2 family transcriptional regulator -
  FJM75_RS06580 - 1265947..1266654 (-) 708 WP_165996872.1 YitT family protein -

Sequence

Protein


Download         Length: 756 a.a.        Molecular weight: 85508.24 Da        Isoelectric Point: 4.7601

>NTDB_id=369234 FJM75_RS06555 WP_165996867.1 1260180..1262450(-) (recD2) [Bacillus sp. Cs-700]
MDQPQKGYIKGRPIQMIFFNEDSLYGVARLRISETNEPYDEKEVVVNGMIPRLLEDETYVFYGRFTDHPRYGKQYAVESF
ERQMPESKPGLIQYLSSDLFHGIGEKTAESIVDALGERAIAKIMRDPSILSKVPKLSEEKAKGLYDSLMEHQGLDQIMIR
LTELGFGPRLSMKIFKAYKQDTLEIVEKNPYQLIQDVEGIGFRRADDLGKSIGIEGKHPDRIRAACLHTLNEQTLQEGHV
YLDYDALIRSVNELLGDRLDEADISRELISLYESDKLILDRERIYLHSLYYAEKGLVTGLNNVMSQTEYADSFPESEFYR
ALGDLEERLGIQYAPSQREAVQKAISSPFMILTGGPGTGKTTVIKGIVELYAELNGLSLDPKDYTKENPFPVLLVAPTGR
AAKRMSEATGLPAFTIHRLLGWKGEAGFEHDENNPIEGRLLIVDEVSMVDVWLANQLFKSLPSQIQLIVVGDEDQLPSVG
PGQVLKDMIDSHAVPVSKLTDIYRQAEGSSIIDLAHSIKEGELPEEFHKPTPDRRFFPCSQSQIIEVVSQVCGNALKKGY
SPRDIQVLAPMYRGSAGVDRLNQELQKLFNPPTDQRRELFHGDLVYRVGDKVLQLVNNPEDNVFNGDMGEVVSVFFAKEN
IEKQDQLVVSFDGQEVVYDRPDFNQLTHAYCCSIHKSQGSEFPIVVLPIVRGYYRMLRKNLLYTAVTRSKDYLILCGEED
AIKLAIKTEDDQIRNTQLTEKLQEMIGEQTTIEESI

Nucleotide


Download         Length: 2271 bp        

>NTDB_id=369234 FJM75_RS06555 WP_165996867.1 1260180..1262450(-) (recD2) [Bacillus sp. Cs-700]
ATGGATCAGCCACAAAAAGGCTATATCAAAGGAAGACCGATACAAATGATTTTCTTCAATGAAGATAGTTTGTATGGGGT
GGCAAGACTACGAATATCAGAAACGAATGAACCCTACGATGAGAAAGAAGTCGTTGTAAATGGAATGATTCCAAGGCTTT
TGGAAGATGAAACGTACGTATTTTATGGACGGTTTACAGACCATCCACGCTACGGAAAACAGTATGCTGTTGAATCATTT
GAACGACAGATGCCTGAATCGAAACCGGGGCTTATTCAATACTTATCAAGTGATTTATTCCATGGAATTGGTGAAAAGAC
TGCGGAATCGATTGTTGATGCGCTAGGAGAGCGCGCCATAGCTAAGATTATGCGTGATCCCTCAATATTAAGTAAGGTAC
CAAAGCTATCTGAAGAAAAAGCAAAAGGATTATATGATTCTCTCATGGAGCATCAGGGGCTTGACCAAATTATGATTCGA
TTAACTGAATTAGGGTTTGGACCGAGACTATCGATGAAAATTTTTAAAGCATATAAACAAGACACACTCGAAATTGTTGA
GAAAAATCCTTATCAGCTTATTCAAGATGTGGAAGGTATTGGTTTTCGACGAGCGGACGATTTAGGGAAATCGATTGGTA
TTGAGGGAAAGCATCCTGATCGCATTAGGGCGGCATGTCTTCATACGTTAAATGAACAAACGTTACAGGAAGGACATGTG
TATCTAGATTACGATGCTTTGATTCGATCTGTAAATGAGCTGCTAGGTGATCGACTTGATGAAGCAGATATTTCAAGGGA
ACTCATTTCGCTTTATGAGAGTGATAAGTTAATTCTGGATCGAGAGAGAATCTATTTACATTCACTTTACTATGCTGAAA
AAGGTCTTGTCACTGGATTGAATAATGTGATGTCACAAACAGAGTATGCTGATTCTTTTCCTGAATCTGAATTTTATCGC
GCGCTTGGAGATCTCGAAGAACGACTCGGCATTCAATATGCGCCATCACAGCGTGAAGCGGTACAAAAAGCGATATCGTC
TCCGTTCATGATTTTAACTGGAGGGCCTGGTACGGGCAAAACAACCGTTATAAAAGGGATTGTTGAGCTTTATGCTGAAT
TAAATGGCCTTTCTTTAGATCCAAAAGATTACACAAAAGAAAATCCCTTTCCCGTTCTGCTCGTCGCACCAACAGGAAGA
GCAGCCAAACGAATGAGTGAAGCAACCGGATTACCGGCTTTCACGATACATAGATTACTTGGCTGGAAAGGGGAGGCGGG
CTTTGAACATGATGAGAATAATCCAATTGAAGGTAGATTATTAATTGTGGATGAAGTATCTATGGTTGACGTGTGGCTAG
CCAATCAATTATTTAAATCCTTACCATCTCAAATTCAATTGATTGTTGTTGGGGATGAAGACCAACTTCCTTCAGTAGGA
CCAGGACAGGTCCTTAAGGATATGATTGATTCACATGCTGTTCCCGTTAGTAAACTGACGGACATTTATCGGCAGGCTGA
AGGCTCTTCGATTATTGATCTTGCCCACTCCATTAAAGAAGGAGAGCTTCCAGAAGAGTTCCATAAACCGACGCCTGATC
GAAGGTTCTTTCCTTGTTCTCAATCTCAGATTATTGAGGTTGTTTCGCAAGTTTGTGGCAATGCATTAAAGAAGGGATAC
TCTCCTCGAGATATTCAAGTTCTTGCTCCGATGTATCGAGGATCAGCTGGAGTGGATCGACTAAATCAAGAGCTTCAAAA
GCTATTTAACCCTCCAACAGATCAGCGAAGAGAGCTTTTTCATGGAGATCTCGTGTATCGAGTCGGAGATAAAGTTCTTC
AACTTGTAAACAATCCTGAAGACAATGTGTTCAATGGCGATATGGGCGAGGTGGTTTCTGTATTCTTTGCGAAAGAAAAT
ATTGAAAAGCAGGATCAACTTGTAGTTTCTTTTGATGGACAGGAAGTGGTTTATGACAGGCCTGACTTTAATCAATTAAC
CCATGCCTATTGCTGCTCTATACATAAATCCCAGGGTAGTGAGTTTCCAATTGTGGTTCTTCCTATTGTAAGAGGATATT
ATCGGATGCTGCGGAAGAACCTTCTTTATACAGCCGTTACAAGAAGCAAAGATTATTTGATTTTGTGCGGTGAAGAAGAT
GCGATTAAGCTTGCTATAAAAACAGAAGATGATCAGATTCGAAATACGCAGTTAACAGAGAAATTGCAAGAAATGATTGG
CGAACAAACAACAATTGAAGAATCAATCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(333-528)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-241)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(581-651)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(668-716)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

58.367

98.81

0.577

Multiple sequence alignment