Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FJM75_RS01315 Genome accession   NZ_CP041063
Coordinates   253714..254490 (+) Length   258 a.a.
NCBI ID   WP_098443374.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 248714..259490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS01295 trmFO 249436..250740 (+) 1305 WP_159782359.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FJM75_RS01300 xerC 250802..251707 (+) 906 WP_165995383.1 tyrosine recombinase XerC -
  FJM75_RS01305 hslV 251728..252267 (+) 540 WP_098443372.1 ATP-dependent protease subunit HslV -
  FJM75_RS01310 hslU 252298..253692 (+) 1395 WP_165995384.1 ATP-dependent protease ATPase subunit HslU -
  FJM75_RS01315 codY 253714..254490 (+) 777 WP_098443374.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FJM75_RS01320 rpsB 254778..255509 (+) 732 WP_098443375.1 30S ribosomal protein S2 -
  FJM75_RS01325 tsf 255610..256491 (+) 882 WP_159782363.1 translation elongation factor Ts -
  FJM75_RS01330 pyrH 256565..257290 (+) 726 WP_098443377.1 UMP kinase -
  FJM75_RS01335 frr 257292..257849 (+) 558 WP_098443378.1 ribosome recycling factor -
  FJM75_RS01340 - 257965..258708 (+) 744 WP_237438616.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 28758.85 Da        Isoelectric Point: 4.5514

>NTDB_id=369225 FJM75_RS01315 WP_098443374.1 253714..254490(+) (codY) [Bacillus sp. Cs-700]
MNLLEKTRKINGMLQKSEGPVNFTDMAETLRDAIMANVYVVSRRGKLLGIAINQEIENERMKNMFSERQFPEEYTQNLFN
IGETSSNLDITSEYTAFPVENRDLFEKGLTTIVPIVGGGSRLGTLILSRLSDSFSDDDLLLAEYGATVVGMEILHEKAEE
IEEEARNKAVVQMAISSLSYSELEAIEHIFEELEGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTY
IKVLNDKFLVELSKLKTQ

Nucleotide


Download         Length: 777 bp        

>NTDB_id=369225 FJM75_RS01315 WP_098443374.1 253714..254490(+) (codY) [Bacillus sp. Cs-700]
ATGAATTTACTAGAAAAAACAAGAAAAATTAATGGTATGCTACAAAAGTCAGAGGGGCCAGTTAACTTTACCGATATGGC
AGAAACATTACGTGACGCGATTATGGCTAACGTATATGTTGTAAGCCGTAGAGGGAAATTACTTGGCATCGCGATTAATC
AAGAAATTGAGAACGAACGTATGAAGAATATGTTCTCAGAGCGTCAGTTTCCTGAAGAATATACGCAGAATCTCTTTAAC
ATTGGTGAAACGTCTTCGAATCTTGACATTACAAGCGAATACACAGCTTTCCCTGTAGAGAATCGTGATCTTTTCGAAAA
AGGTCTAACAACGATTGTACCAATCGTTGGTGGTGGAAGCCGTCTAGGTACGCTTATTCTTTCTCGTCTAAGCGATTCAT
TCTCAGATGATGATCTTTTGTTAGCTGAGTACGGTGCAACCGTAGTAGGAATGGAAATTCTTCATGAGAAAGCAGAAGAA
ATTGAAGAAGAAGCAAGAAACAAAGCAGTCGTTCAAATGGCGATTTCTTCTCTTTCCTATAGTGAACTTGAAGCAATTGA
GCATATTTTCGAAGAACTCGAAGGAAATGAAGGACTTCTTGTTGCAAGTAAAATTGCTGATCGCGTAGGGATTACACGTT
CTGTCATCGTAAACGCTCTTCGTAAGCTTGAGAGTGCTGGTGTTATTGAGTCTCGTTCTCTAGGAATGAAAGGAACTTAT
ATTAAAGTTCTTAACGATAAGTTTCTTGTAGAACTTTCAAAACTGAAGACGCAATAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(197-254)

CodY GAF-like domain (CodY)

(2-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

83.012

100

0.833
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.471

99.612

0.473

Multiple sequence alignment