Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GZH78_RS02965 Genome accession   NZ_CP048408
Coordinates   657544..658278 (+) Length   244 a.a.
NCBI ID   WP_064592877.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain DR397     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 652544..663278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS02950 (GZH78_02950) mdoH 652710..655280 (+) 2571 WP_074689544.1 glucans biosynthesis glucosyltransferase MdoH -
  GZH78_RS02955 (GZH78_02955) - 655653..656450 (+) 798 WP_039772466.1 transporter substrate-binding domain-containing protein -
  GZH78_RS02960 (GZH78_02960) - 656592..657551 (+) 960 WP_163973878.1 amino acid ABC transporter permease -
  GZH78_RS02965 (GZH78_02965) amiE 657544..658278 (+) 735 WP_064592877.1 amino acid ABC transporter ATP-binding protein Regulator
  GZH78_RS02970 (GZH78_02970) - 658469..660385 (-) 1917 WP_163973879.1 methyl-accepting chemotaxis protein -
  GZH78_RS02975 (GZH78_02975) - 660477..661184 (-) 708 WP_163973880.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  GZH78_RS02980 (GZH78_02980) tatC 661181..661969 (-) 789 WP_085611144.1 twin-arginine translocase subunit TatC -
  GZH78_RS02985 (GZH78_02985) tatB 661966..662403 (-) 438 WP_039772458.1 Sec-independent protein translocase protein TatB -
  GZH78_RS02990 (GZH78_02990) - 662414..662692 (-) 279 WP_007952423.1 twin-arginine translocase TatA/TatE family subunit -
  GZH78_RS02995 (GZH78_02995) - 662718..663050 (-) 333 WP_007952422.1 phosphoribosyl-ATP diphosphatase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26866.04 Da        Isoelectric Point: 5.7488

>NTDB_id=368567 GZH78_RS02965 WP_064592877.1 657544..658278(+) (amiE) [Pseudomonas fluorescens strain DR397]
MIEVRDLVKVFDTRGQVVRAVDNVSTSVAKGEVLVVIGPSGSGKSTFLRCLNGLEEFDSGSVSIDGLQLADPKTDVNAYR
REVGMVFQHFNLFPHMTVLENLCLAQKVVRKRGQKESEAKALALLEKVGIAQKAREYPSRLSGGQQQRVAIARALAMDPK
VMLFDEPTSALDPEMVGEVLDVMKNLAVEGMTMVCVTHEMGFAREVADRVLFFDHGKLLEDASPAEFFDAPKDPRAQAFL
RQVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=368567 GZH78_RS02965 WP_064592877.1 657544..658278(+) (amiE) [Pseudomonas fluorescens strain DR397]
GTGATTGAAGTCCGTGATCTGGTAAAAGTCTTCGACACCCGTGGGCAAGTGGTGCGCGCGGTGGATAACGTCAGCACGTC
CGTGGCCAAGGGTGAAGTGCTGGTGGTGATTGGCCCGTCCGGTTCCGGCAAATCGACCTTTCTGCGTTGCCTTAATGGTC
TGGAAGAATTCGATTCCGGCTCGGTGAGCATCGACGGCCTGCAACTGGCCGACCCGAAAACCGACGTCAACGCCTACCGC
CGCGAAGTCGGCATGGTGTTCCAGCATTTCAATCTGTTCCCGCACATGACCGTGCTGGAAAACCTGTGCCTGGCGCAGAA
AGTCGTGCGCAAGCGCGGCCAGAAGGAAAGCGAGGCCAAGGCTTTGGCATTGCTGGAGAAGGTCGGGATCGCCCAGAAGG
CCCGCGAATATCCGTCGCGCCTGTCCGGCGGTCAGCAGCAGCGCGTGGCGATTGCCCGGGCGCTGGCGATGGACCCCAAG
GTCATGCTGTTCGACGAACCGACCTCGGCCCTCGACCCGGAAATGGTCGGTGAAGTGCTGGACGTGATGAAAAACCTGGC
CGTGGAAGGCATGACCATGGTCTGCGTGACCCACGAAATGGGCTTCGCCCGGGAAGTGGCGGATCGGGTGCTGTTCTTCG
ATCACGGCAAACTGCTGGAAGACGCCTCGCCGGCCGAGTTCTTCGATGCGCCGAAGGATCCGCGAGCCCAGGCGTTCCTG
CGGCAAGTTCTCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

34.109

100

0.361
  amiE Streptococcus thermophilus LMD-9

34.109

100

0.361