Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D3H49_RS00500 Genome accession   NZ_CP040931
Coordinates   127833..129662 (+) Length   609 a.a.
NCBI ID   WP_032738281.1    Uniprot ID   -
Organism   Bifidobacterium breve strain JR01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 122833..134662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3H49_RS00485 (D3H49_00510) - 124290..124553 (-) 264 WP_228550455.1 DUF1684 domain-containing protein -
  D3H49_RS00490 (D3H49_00515) - 125128..125649 (+) 522 WP_003829614.1 MarR family winged helix-turn-helix transcriptional regulator -
  D3H49_RS00495 (D3H49_00525) rcrP 125833..127701 (+) 1869 WP_025341951.1 ABC transporter ATP-binding protein Regulator
  D3H49_RS00500 (D3H49_00530) rcrQ 127833..129662 (+) 1830 WP_032738281.1 ABC transporter ATP-binding protein Regulator
  D3H49_RS00505 (D3H49_00535) - 129671..130612 (-) 942 WP_003829619.1 FAD:protein FMN transferase -
  D3H49_RS00510 (D3H49_00540) - 130717..132135 (+) 1419 WP_015439311.1 MFS transporter -
  D3H49_RS00520 (D3H49_00555) rsmI 132795..133814 (+) 1020 WP_003829622.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  D3H49_RS10075 (D3H49_00560) - 133934..134134 (-) 201 WP_225851453.1 hypothetical protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66637.01 Da        Isoelectric Point: 5.7893

>NTDB_id=368388 D3H49_RS00500 WP_032738281.1 127833..129662(+) (rcrQ) [Bifidobacterium breve strain JR01]
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNS
IDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNWIMALCAIGSSIIGLIIMMVIMKASQKYFTRQQVALGDVNGHVEEMYAGHTIVK
AYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQVLLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVA
IVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNDTVRENIAYSKPGVTDEQIISAC
KAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALAG

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=368388 D3H49_RS00500 WP_032738281.1 127833..129662(+) (rcrQ) [Bifidobacterium breve strain JR01]
ATGCCAAGAGGACCTATGGGCCGCGGAGGTGCGGTCGAAAAACCACAGGATTTCGGCAAAGTCATGGGCAAACTCGTCCG
CTTTTGCCGCAAATACGTTCCTGCCATCATCATCGCGCTTGTGCTGGGCGCGGCTGGCACCATCTGCCAGATTATCGGCC
CGGACAAGCTCAAGGACATGACCAATGAGATCACCAAAGGTCTGCCTGCGGTAGTGCACGGCAAGCCGGTGCTCAACTCG
ATCGACATGGGCGCGGTTGCTCGTATCGGCTGGCTGCTTGTGGTGCTGTATGTGGGCTACGCGTTGCTCAGCTACATTCA
AAGCTGGATGATGGCCACCGTTACGCAGCGCACTGCACAGGAGTTGCGTGAGTCGATCAGCAAGAAGATCAACAAGCTGC
CGCTCAGTTACTTCGACAAAGTCAGCTACGGCGACGTGCTTTCCCGCATCACCAACGATGTGGACGCTATCGGCCAGACG
CTGGGCCAGTCGCTCGGATCGCTGATCACATCCGCGACGCTGTTCGTGGGCGCATTGGTCATGATGTTCTACAACAACTG
GATCATGGCGCTGTGCGCAATCGGTTCAAGCATCATCGGCCTGATCATCATGATGGTCATTATGAAGGCCTCGCAAAAGT
ACTTCACCCGCCAGCAGGTCGCGTTGGGTGATGTGAACGGCCATGTGGAGGAGATGTACGCCGGTCACACCATCGTCAAG
GCATACAACGGCGAGGCGGATTCTATTCGTCGGTTCGAGCGCTACAACGCGGATCTGTACGATTCCGGCTGGAAGTCGCA
GTTCTTGTCTGGTCTGATGATGCCGCTGATGAACTTCGTCGGTAATTTCGGCTATGTGGTGGTGTGCGTGGTGGGTGCCG
CGCTCGCCATGGACGGCCAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTATATCCGCCTGTTTACGCAGCCGCTC
TCGCAGTTTGCGCAGGCGTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAACGCGTATTCGGATTCCTCGAAGAGTC
GGAAATGGCTGACGAATCCGGCAAGCAGGTGCTGCTTGGCGCTCAAGGCCATGAGGTGCACGGCGATGTGGAATTCAGTC
ACGTGCGCTTTGAATATGAGGCCGGCAAGCCGATTATCAACGACTTCTCCGCTTCTGTCTCCTCCGGTCAGAAGGTTGCT
ATTGTGGGCCCGACCGGTGCCGGTAAGACCACTATGGTCAACCTACTTATGCGCTTCTACGAGATTGCCGGTGGCTCGAT
CGCCATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACCT
GGATCTTTAATGACACTGTGCGCGAGAACATCGCCTACTCCAAGCCGGGCGTTACGGATGAGCAGATCATCAGCGCATGC
AAAGCTGTGGGATTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGAGAATTCGTCGCTGTC
CGCCGGCCAGAAGCAGCTGCTCACCATTGCCCGCGCAATGGTACAGGACGCACCGATTCTGATCCTCGATGAGGCCACAT
CTTCGGTCGATACCCGTACTGAAGAGTTGATTCAGAAGGCCATGGACGCGTTGACCGTGGACCGTACCTCCTTCGTGATT
GCGCACCGCCTCTCCACGATTCGCGACGCCGACATGATTCTCGTCATGAATCATGGCGATGTGATCGAACGCGGCACGCA
TGAGGAGTTGCTGGCTGCTGGTGGCTTCTACGCTGATTTATACAACAGCCAGTTCGCGTTGGCGGGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.504

96.059

0.514

Multiple sequence alignment