Detailed information NTG0036826

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: SAA6159_RS05840
• Genome accession: NC_017338
• Coordinates: 1231578..1232351 (+)
• Length: 257 a.a.
• NCBI ID: WP_000055340.1
• Uniprot ID: -
• Organism: Staphylococcus aureus subsp. aureus JKD6159
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1226578..1237351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAA6159_RS05820 (SAA6159_01106)	trmFO	1226922..1228229 (+)	1308	WP_000195259.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
SAA6159_RS05825 (SAA6159_01107)	xerC	1228646..1229542 (+)	897	WP_001015608.1	tyrosine recombinase XerC	-
SAA6159_RS05830 (SAA6159_01108)	hslV	1229539..1230084 (+)	546	WP_000072681.1	ATP-dependent protease subunit HslV	-
SAA6159_RS05835 (SAA6159_01109)	hslU	1230150..1231553 (+)	1404	WP_000379054.1	ATP-dependent protease ATPase subunit HslU	-
SAA6159_RS05840 (SAA6159_01110)	codY	1231578..1232351 (+)	774	WP_000055340.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
SAA6159_RS05845 (SAA6159_03030)	-	1232425..1232499 (+)	75	WP_044026084.1	hypothetical protein	-
SAA6159_RS05850 (SAA6159_01111)	rpsB	1232698..1233465 (+)	768	WP_000268484.1	30S ribosomal protein S2	-
SAA6159_RS05855 (SAA6159_03035)	-	1233499..1233612 (+)	114	WP_001789890.1	hypothetical protein	-
SAA6159_RS05860 (SAA6159_01112)	tsf	1233647..1234528 (+)	882	WP_000201387.1	translation elongation factor Ts	-
SAA6159_RS05865 (SAA6159_01113)	pyrH	1234665..1235387 (+)	723	WP_000057330.1	UMP kinase	-
SAA6159_RS05870 (SAA6159_01114)	frr	1235406..1235960 (+)	555	WP_001280006.1	ribosome recycling factor	-
SAA6159_RS05875 (SAA6159_01115)	-	1236333..1237103 (+)	771	WP_000473705.1	isoprenyl transferase	-

Sequence

Protein

• Length: 257 a.a.
• Molecular weight: 28741.10 Da
• Isoelectric Point: 6.0680

>NTDB_id=36826 SAA6159_RS05840 WP_000055340.1 1231578..1232351(+) (codY) [Staphylococcus aureus subsp. aureus JKD6159]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFVDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide

• Length: 774 bp

>NTDB_id=36826 SAA6159_RS05840 WP_000055340.1 1231578..1232351(+) (codY) [Staphylococcus aureus subsp. aureus JKD6159]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCACGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCGT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCGATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

• CodY GAF-like domain (CodY) (2-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	64.202	100	0.642
codY	Lactococcus lactis subsp. lactis strain DGCC12653	42.802	100	0.428