Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GZS12_RS01340 Genome accession   NZ_CP048337
Coordinates   312706..313470 (-) Length   254 a.a.
NCBI ID   WP_001136211.1    Uniprot ID   -
Organism   Escherichia coli strain 142     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 307706..318470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS12_RS01315 (GZS12_01315) yhhJ 309549..310673 (+) 1125 WP_001314210.1 ABC transporter permease -
  GZS12_RS01320 (GZS12_01320) - 310746..311021 (+) 276 Protein_269 type II toxin-antitoxin system HicA family toxin -
  GZS12_RS01325 (GZS12_01325) - 311018..311377 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  GZS12_RS01330 (GZS12_01330) nikR 311497..311898 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  GZS12_RS01335 (GZS12_01335) nikE 311903..312709 (-) 807 WP_000173690.1 nickel import ATP-binding protein NikE -
  GZS12_RS01340 (GZS12_01340) amiE 312706..313470 (-) 765 WP_001136211.1 nickel import ATP-binding protein NikD Regulator
  GZS12_RS01345 (GZS12_01345) nikC 313470..314303 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  GZS12_RS01350 (GZS12_01350) nikB 314300..315244 (-) 945 WP_000947080.1 nickel ABC transporter permease subunit NikB -
  GZS12_RS01355 (GZS12_01355) nikA 315244..316818 (-) 1575 WP_022646227.1 nickel ABC transporter substrate-binding protein -
  GZS12_RS01360 (GZS12_01360) acpT 316929..317516 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.45 Da        Isoelectric Point: 6.9016

>NTDB_id=367997 GZS12_RS01340 WP_001136211.1 312706..313470(-) (amiE) [Escherichia coli strain 142]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=367997 GZS12_RS01340 WP_001136211.1 312706..313470(-) (amiE) [Escherichia coli strain 142]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGTGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTTCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTTGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATTCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398