Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | FHP15_RS20185 | Genome accession | NZ_CP040880 |
| Coordinates | 3643677..3644456 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus paranthracis strain F3351/87 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3617056..3663091 | 3643677..3644456 | within | 0 |
Gene organization within MGE regions
Location: 3617056..3663091
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FHP15_RS20065 (FHP15_20040) | - | 3617250..3617501 (-) | 252 | WP_001239754.1 | YlmC/YmxH family sporulation protein | - |
| FHP15_RS20070 (FHP15_20045) | - | 3617628..3618869 (-) | 1242 | WP_000592994.1 | pitrilysin family protein | - |
| FHP15_RS20075 (FHP15_20050) | - | 3618956..3619855 (-) | 900 | WP_000647527.1 | polysaccharide deacetylase family protein | - |
| FHP15_RS20080 (FHP15_20055) | pnp | 3620007..3622145 (-) | 2139 | WP_000076746.1 | polyribonucleotide nucleotidyltransferase | - |
| FHP15_RS20085 (FHP15_20060) | rpsO | 3622306..3622575 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| FHP15_RS20090 (FHP15_20065) | ribF | 3622676..3623647 (-) | 972 | WP_000766710.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| FHP15_RS20095 (FHP15_20070) | truB | 3623691..3624614 (-) | 924 | WP_000399344.1 | tRNA pseudouridine(55) synthase TruB | - |
| FHP15_RS20100 (FHP15_20075) | rbfA | 3624701..3625057 (-) | 357 | WP_000776440.1 | 30S ribosome-binding factor RbfA | - |
| FHP15_RS20105 (FHP15_20080) | - | 3625073..3625354 (-) | 282 | WP_000582364.1 | DUF503 family protein | - |
| FHP15_RS20110 (FHP15_20085) | infB | 3625351..3627411 (-) | 2061 | WP_000036342.1 | translation initiation factor IF-2 | - |
| FHP15_RS20115 (FHP15_20090) | - | 3627416..3627727 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| FHP15_RS20120 (FHP15_20095) | - | 3627728..3628000 (-) | 273 | WP_000071128.1 | YlxR family protein | - |
| FHP15_RS20125 (FHP15_20100) | nusA | 3628012..3629118 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| FHP15_RS20130 (FHP15_20105) | rimP | 3629136..3629606 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| FHP15_RS20135 (FHP15_20110) | - | 3629939..3634240 (-) | 4302 | WP_000059980.1 | PolC-type DNA polymerase III | - |
| FHP15_RS20140 (FHP15_20115) | - | 3634365..3636065 (-) | 1701 | WP_000814305.1 | proline--tRNA ligase | - |
| FHP15_RS20145 (FHP15_20120) | rseP | 3636175..3637431 (-) | 1257 | WP_001090248.1 | RIP metalloprotease RseP | - |
| FHP15_RS20150 (FHP15_20125) | dxr | 3637448..3638590 (-) | 1143 | WP_000790362.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| FHP15_RS20155 (FHP15_20130) | cdsA | 3638614..3639405 (-) | 792 | WP_000813584.1 | phosphatidate cytidylyltransferase | - |
| FHP15_RS20160 (FHP15_20135) | uppS | 3639423..3640199 (-) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| FHP15_RS20165 (FHP15_20140) | frr | 3640285..3640842 (-) | 558 | WP_000531500.1 | ribosome recycling factor | - |
| FHP15_RS20170 (FHP15_20145) | pyrH | 3640845..3641567 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| FHP15_RS20175 (FHP15_20150) | tsf | 3641634..3642521 (-) | 888 | WP_001018580.1 | translation elongation factor Ts | - |
| FHP15_RS20180 (FHP15_20155) | rpsB | 3642625..3643326 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| FHP15_RS20185 (FHP15_20160) | codY | 3643677..3644456 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| FHP15_RS20190 (FHP15_20165) | hslU | 3644534..3645925 (-) | 1392 | WP_000550081.1 | ATP-dependent protease ATPase subunit HslU | - |
| FHP15_RS20195 (FHP15_20170) | hslV | 3645948..3646490 (-) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| FHP15_RS20200 (FHP15_20175) | xerC | 3646533..3647432 (-) | 900 | WP_001101229.1 | tyrosine recombinase XerC | - |
| FHP15_RS20205 (FHP15_20180) | trmFO | 3647498..3648802 (-) | 1305 | WP_002028254.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| FHP15_RS20210 (FHP15_20185) | topA | 3648853..3650931 (-) | 2079 | WP_001286973.1 | type I DNA topoisomerase | - |
| FHP15_RS20215 (FHP15_20190) | dprA | 3651076..3651945 (-) | 870 | WP_000818031.1 | DNA-processing protein DprA | - |
| FHP15_RS20220 (FHP15_20195) | sucD | 3652033..3652935 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| FHP15_RS20225 (FHP15_20200) | sucC | 3652955..3654115 (-) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| FHP15_RS20230 (FHP15_20205) | rnhB | 3654309..3655082 (-) | 774 | WP_001174725.1 | ribonuclease HII | - |
| FHP15_RS20235 (FHP15_20210) | ylqF | 3655134..3656024 (-) | 891 | WP_000236700.1 | ribosome biogenesis GTPase YlqF | - |
| FHP15_RS20240 (FHP15_20215) | lepB | 3656045..3656596 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| FHP15_RS20245 (FHP15_20220) | rplS | 3656698..3657042 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| FHP15_RS20250 (FHP15_20225) | trmD | 3657189..3657923 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FHP15_RS20255 (FHP15_20230) | rimM | 3657923..3658438 (-) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| FHP15_RS20260 (FHP15_20235) | - | 3658562..3658789 (-) | 228 | WP_000737403.1 | KH domain-containing protein | - |
| FHP15_RS20265 (FHP15_20240) | rpsP | 3658804..3659076 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| FHP15_RS20270 (FHP15_20245) | ffh | 3659177..3660526 (-) | 1350 | WP_000863461.1 | signal recognition particle protein | - |
| FHP15_RS20275 (FHP15_20250) | - | 3660539..3660871 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| FHP15_RS20280 (FHP15_20255) | ftsY | 3661005..3661994 (-) | 990 | WP_000007646.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=367880 FHP15_RS20185 WP_000421288.1 3643677..3644456(-) (codY) [Bacillus paranthracis strain F3351/87]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=367880 FHP15_RS20185 WP_000421288.1 3643677..3644456(-) (codY) [Bacillus paranthracis strain F3351/87]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCTTACATGAACTTGCTAAATTGAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGCTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCTTACATGAACTTGCTAAATTGAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |