Detailed information NTG0367640

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: FEE40_RS12135
• Genome accession: NZ_CP040852
• Coordinates: 2447367..2448203 (-)
• Length: 278 a.a.
• NCBI ID: WP_163588160.1
• Uniprot ID: -
• Organism: Ligilactobacillus murinus strain V10
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 2442367..2453203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FEE40_RS12105 (FEE40_12020)	-	2442508..2443113 (-)	606	WP_004049315.1	response regulator transcription factor	-
FEE40_RS12110 (FEE40_12025)	-	2443091..2444227 (-)	1137	WP_163588157.1	histidine kinase	-
FEE40_RS12115 (FEE40_12030)	-	2444229..2444948 (-)	720	WP_112286324.1	ABC transporter permease	-
FEE40_RS12120 (FEE40_12035)	-	2444932..2445822 (-)	891	WP_163588158.1	ABC transporter ATP-binding protein	-
FEE40_RS12125 (FEE40_12040)	-	2445954..2446829 (-)	876	WP_163588416.1	type II CAAX endopeptidase family protein	-
FEE40_RS12130 (FEE40_12045)	-	2447056..2447367 (-)	312	WP_004049323.1	hypothetical protein	-
FEE40_RS12135 (FEE40_12050)	endA	2447367..2448203 (-)	837	WP_163588160.1	DNA/RNA non-specific endonuclease	Machinery gene
FEE40_RS12140 (FEE40_12055)	asnA	2448263..2449270 (-)	1008	WP_163588161.1	aspartate--ammonia ligase	-
FEE40_RS12145 (FEE40_12060)	-	2449451..2450623 (+)	1173	WP_004047661.1	IS256 family transposase	-
FEE40_RS12150 (FEE40_12065)	-	2450784..2451431 (+)	648	WP_163588002.1	nitroreductase	-
FEE40_RS12155 (FEE40_12070)	-	2451602..2452027 (-)	426	WP_163588003.1	N-acetyltransferase	-
FEE40_RS12160 (FEE40_12075)	-	2452095..2452481 (+)	387	WP_163588004.1	DUF1801 domain-containing protein	-

Sequence

Protein

• Length: 278 a.a.
• Molecular weight: 30333.98 Da
• Isoelectric Point: 10.5836

>NTDB_id=367640 FEE40_RS12135 WP_163588160.1 2447367..2448203(-) (endA) [Ligilactobacillus murinus strain V10]
MKFKKILTGFAAALMLSGAIGAPVTAKATTHYGGWRTHQKNSSSGSGELKKSTPSQQLAQTVLTPDVVKQLGGEQNLKWN
NSGAFIVNNNKTGLKAKVSSAPYATNEVDSLKRPTVANALLNRTTRQYKNRHQTNNGSTKWRPQGFKQLTNLSGAYNHAY
DRGHLLGYALVGNIRGFDASESNPKNIATQTAWANEANAKYSTGQNYYESLVRKALDRNKTVRYRVTNVYSGNNLVPSGA
HLEAKASDGSLEYNVFIPNVQKGLKIDYATGHAIKENN

Nucleotide

• Length: 837 bp

>NTDB_id=367640 FEE40_RS12135 WP_163588160.1 2447367..2448203(-) (endA) [Ligilactobacillus murinus strain V10]
ATGAAGTTCAAAAAAATACTGACCGGATTTGCGGCAGCTTTGATGCTCAGTGGTGCGATCGGGGCACCGGTAACAGCTAA
AGCAACGACGCACTATGGTGGTTGGCGCACACATCAAAAAAATAGTTCGAGTGGCTCTGGTGAATTAAAAAAGAGCACTC
CATCACAACAATTAGCCCAAACGGTTTTGACGCCGGATGTTGTTAAACAATTGGGCGGTGAGCAAAATCTCAAATGGAAC
AACAGTGGGGCTTTTATCGTTAATAACAACAAGACAGGTTTAAAAGCTAAGGTTTCTAGTGCTCCTTATGCAACAAATGA
AGTCGATAGCTTAAAACGTCCGACGGTAGCCAATGCCCTTTTGAATAGGACAACACGGCAATACAAGAATCGCCACCAAA
CTAATAATGGTTCGACTAAATGGAGACCACAGGGCTTTAAGCAACTCACTAACTTAAGTGGCGCCTACAACCATGCTTAT
GATCGCGGACACTTACTAGGGTATGCTTTAGTGGGAAATATTCGTGGTTTTGATGCTAGTGAGAGCAATCCCAAAAATAT
TGCGACTCAGACAGCTTGGGCTAATGAAGCTAATGCAAAATATTCAACAGGTCAAAACTATTACGAAAGTCTTGTTCGAA
AAGCCTTAGATCGTAATAAGACTGTCCGTTATCGTGTGACAAATGTCTATAGCGGTAATAATTTAGTACCATCAGGCGCT
CATTTAGAAGCTAAAGCAAGTGATGGTTCGTTAGAGTATAATGTTTTTATCCCTAATGTTCAAAAGGGATTAAAGATCGA
CTATGCTACTGGTCATGCGATAAAGGAGAACAACTGA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (82-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	65.471	80.216	0.525
endA	Streptococcus pneumoniae D39	65.471	80.216	0.525
endA	Streptococcus pneumoniae R6	65.471	80.216	0.525
endA	Streptococcus pneumoniae TIGR4	65.471	80.216	0.525