Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GYN04_RS03950 Genome accession   NZ_CP048254
Coordinates   765931..766548 (+) Length   205 a.a.
NCBI ID   WP_003688660.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT530     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 760931..771548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN04_RS03935 (GYN04_03810) - 762125..763753 (-) 1629 WP_010951119.1 ABC-F family ATPase -
  GYN04_RS03940 (GYN04_03815) - 763903..764277 (+) 375 WP_003688664.1 arsenate reductase -
  GYN04_RS03945 (GYN04_03820) - 764326..765864 (+) 1539 WP_003695299.1 SurA N-terminal domain-containing protein -
  GYN04_RS03950 (GYN04_03825) recR 765931..766548 (+) 618 WP_003688660.1 recombination mediator RecR Machinery gene
  GYN04_RS03955 (GYN04_03830) - 766604..766882 (-) 279 WP_003688659.1 hypothetical protein -
  GYN04_RS03960 (GYN04_03835) - 767108..768355 (+) 1248 WP_003691197.1 lipoprotein-releasing ABC transporter permease subunit -
  GYN04_RS03965 (GYN04_03840) lolD 768348..769043 (+) 696 WP_003688655.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GYN04_RS03970 (GYN04_03845) recD 769110..770855 (+) 1746 WP_192214676.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22486.82 Da        Isoelectric Point: 6.1074

>NTDB_id=367547 GYN04_RS03950 WP_003688660.1 765931..766548(+) (recR) [Neisseria gonorrhoeae strain CT530]
MNSKKQDAFQRLIGALKVLPNVGPKSAQRMAYHLLQQKRKEAEELVDALQTALRQVRHCARCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNIEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLDGGEIEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=367547 GYN04_RS03950 WP_003688660.1 765931..766548(+) (recR) [Neisseria gonorrhoeae strain CT530]
ATGAATTCCAAAAAACAGGATGCATTCCAACGCCTGATCGGTGCGCTGAAAGTATTGCCCAACGTCGGGCCGAAATCGGC
ACAGCGGATGGCGTACCATCTGTTGCAGCAAAAGCGCAAAGAGGCTGAAGAGCTGGTGGATGCCTTACAGACGGCATTGA
GGCAGGTTCGCCATTGCGCAAGGTGCAATACATTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATAGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
ACGGCGGGGAAATCGAAGAAATCATTATCGCGACCGCCTTTACCGCAGAAGGCAATGCCACAGCGTATGTCCTGTCCGAG
TTTTTCAAAAACCTGCCTTACAAGGTCAGCAGGCTGTCGCAGGGCATCCCATTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGGCGTCTGATTAAAGAAGGCGGGGCGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.191

97.073

0.371