Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GYN05_RS03945 Genome accession   NZ_CP048250
Coordinates   763847..764464 (+) Length   205 a.a.
NCBI ID   WP_003688660.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT532     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 758847..769464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN05_RS03930 (GYN05_03790) - 760041..761669 (-) 1629 WP_250328986.1 ABC-F family ATPase -
  GYN05_RS03935 (GYN05_03795) - 761819..762193 (+) 375 WP_003688664.1 arsenate reductase -
  GYN05_RS03940 (GYN05_03800) - 762242..763780 (+) 1539 WP_003695299.1 SurA N-terminal domain-containing protein -
  GYN05_RS03945 (GYN05_03805) recR 763847..764464 (+) 618 WP_003688660.1 recombination mediator RecR Machinery gene
  GYN05_RS03950 (GYN05_03810) - 764520..764798 (-) 279 WP_003688659.1 hypothetical protein -
  GYN05_RS03955 (GYN05_03815) - 765024..766271 (+) 1248 WP_250328987.1 lipoprotein-releasing ABC transporter permease subunit -
  GYN05_RS03960 (GYN05_03820) lolD 766264..766959 (+) 696 WP_106336981.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GYN05_RS03965 (GYN05_03825) recD 767026..768771 (+) 1746 WP_010358120.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22486.82 Da        Isoelectric Point: 6.1074

>NTDB_id=367476 GYN05_RS03945 WP_003688660.1 763847..764464(+) (recR) [Neisseria gonorrhoeae strain CT532]
MNSKKQDAFQRLIGALKVLPNVGPKSAQRMAYHLLQQKRKEAEELVDALQTALRQVRHCARCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNIEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLDGGEIEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=367476 GYN05_RS03945 WP_003688660.1 763847..764464(+) (recR) [Neisseria gonorrhoeae strain CT532]
ATGAATTCCAAAAAACAGGATGCATTCCAACGCCTGATCGGTGCGCTGAAAGTATTGCCCAACGTCGGGCCGAAATCGGC
ACAGCGGATGGCGTACCATCTGTTGCAGCAAAAGCGCAAAGAGGCTGAAGAGCTGGTGGATGCCTTACAGACGGCATTGA
GGCAGGTTCGCCATTGCGCAAGGTGCAATACATTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATAGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
ACGGCGGGGAAATCGAAGAAATCATTATCGCGACCGCCTTTACCGCAGAAGGCAATGCCACAGCGTATGTCCTGTCCGAG
TTTTTCAAAAACCTGCCTTACAAGGTCAGCAGGCTGTCGCAGGGCATCCCATTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGGCGTCTGATTAAAGAAGGCGGGGCGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.191

97.073

0.371