Detailed information NTG0367293

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: GSF71_RS09640
• Genome accession: NZ_CP048116
• Coordinates: 1932012..1934540 (+)
• Length: 842 a.a.
• NCBI ID: WP_056936400.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain MBEL1397
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1927012..1939540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSF71_RS09620	-	1927654..1928952 (+)	1299	WP_016264986.1	pyrimidine-nucleoside phosphorylase	-
GSF71_RS09625	-	1929189..1930523 (+)	1335	WP_025015827.1	FAD-dependent oxidoreductase	-
GSF71_RS09630	-	1930676..1931335 (+)	660	WP_016264988.1	histidine phosphatase family protein	-
GSF71_RS09635	-	1931347..1932006 (+)	660	WP_016264989.1	tetratricopeptide repeat protein	-
GSF71_RS09640	recD/recD2/recDB	1932012..1934540 (+)	2529	WP_056936400.1	ATP-dependent RecD-like DNA helicase	Machinery gene
GSF71_RS09645	-	1934583..1935794 (+)	1212	WP_011374512.1	GNAT family N-acetyltransferase	-
GSF71_RS09650	-	1935855..1936094 (-)	240	WP_011374513.1	hypothetical protein	-
GSF71_RS09655	-	1936359..1936970 (+)	612	WP_016264992.1	LysE/ArgO family amino acid transporter	-
GSF71_RS09660	-	1937062..1938174 (+)	1113	WP_016264993.1	DNA alkylation repair protein	-
GSF71_RS09665	-	1938353..1938580 (+)	228	WP_162100992.1	MerR family transcriptional regulator	-
GSF71_RS09670	-	1938593..1939069 (+)	477	WP_162100993.1	hypothetical protein	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93311.49 Da
• Isoelectric Point: 5.0804

>NTDB_id=367293 GSF71_RS09640 WP_056936400.1 1932012..1934540(+) (recD/recD2/recDB) [Latilactobacillus sakei strain MBEL1397]
MAILETENTVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDGVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKERGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPAVEKPTPAKEAAPEQLALVDDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=367293 GSF71_RS09640 WP_056936400.1 1932012..1934540(+) (recD/recD2/recDB) [Latilactobacillus sakei strain MBEL1397]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAACGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATTGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAGGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCCGGCATCGGTCAAAAAACGGCAGAGAAGATTGTCGATACCTTAGGATTAGACGCGATTGATAAGATCTTAGCGGATT
CAACCGTTTTAGCGCCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGTTGACGATTAATAATGGGATG
GAACAAATTATCATTGGCCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAATATCTATCAGACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGGGCGGATAATT
TAGCCGAGAAAATTGGCTTTGCAGCCGATTCGCCAGCACGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACA
AATCAAGCGGGTGATACGTTCACTCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCACGGAACGT
GGCGATTGATCCGAATTTAGTGGCAGAGCAATTAATGGTCTTGGCACACGACGGCAAAGTGGTCGGAGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTGCGAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGCCGGCTCGAAAAACGTTTTAAGATGAGCTATGATGGTGTTCAAAA
AAATGCAATCAAATTGGCGATGACGCACAGAGCCTTTCTACTAACGGGGGGCCCTGGTACGGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTCCCAATT
TTATTGGCGGCACCCACCGGGCGAGCCGCTAAACGGATGAGTGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGTTT
GTTAGGGATTACGGGCCGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCGCTGATTCGAGCGGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTACCGACAAGACGATGAGTCGACGATTATTCCGCTAGCCCATGAGATTAATCAGGGCCAACTACCAGCTG
ATTTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCAGTGATTAAACAAGTGGTC
ACTAAAGCAAAAGAACGGGGTTTTGAGACGAAGGACATTCAAGTGCTAGCACCGATGTATCGTGGGGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATCATGAATCCGAAGGTCGATGATCGTAAGAAACAAGTTAGTTTAGGCAATGTTC
ATTACCGGATTGGCGATAAGATTTTACATCTGGTTAATAGTCCGGAATTAAACGTCTTTAACGGTGAAATTGGGCAAATA
ACCGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCATTGGTTAACCAATACCAGCGGATGCTGAAACGGAACTTGTTGTATACAGCAGTGACACGGGCGCGGTCC
TTATTGATTTTAATTGGGGAACCAAGTGCTTTTGATAAAGCAGCTAAGGAATTATCCGCAAACCGACAAACAACGCTTAA
AGAACGGATTATCAGCGTCTTTAATGGTGAAAAGGTGAGCCAAGCGGTCAAAACTGCAAGTGTTGGTTTAACGGAAGCTA
AACCGGCTGTTGAAAAGCCAACGCCGGCTAAAGAAGCGGCGCCAGAACAATTGGCATTAGTGGACGATGCAGATGACAGC
GAAGAAACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGAATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• AAA domain (AAA_30) (343-547)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	46.933	89.074	0.418