Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   GSF71_RS07250 Genome accession   NZ_CP048116
Coordinates   1485009..1487372 (+) Length   787 a.a.
NCBI ID   WP_025016289.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MBEL1397     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1480009..1492372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSF71_RS07225 - 1482051..1482311 (+) 261 WP_011374097.1 IreB family regulatory phosphoprotein -
  GSF71_RS07230 ruvX 1482311..1482754 (+) 444 WP_011374098.1 Holliday junction resolvase RuvX -
  GSF71_RS07235 - 1482804..1483115 (+) 312 WP_011374099.1 DUF1292 domain-containing protein -
  GSF71_RS07240 rnhC 1483303..1484220 (-) 918 WP_011374100.1 ribonuclease HIII -
  GSF71_RS07245 - 1484414..1484953 (+) 540 WP_016264660.1 CvpA family protein -
  GSF71_RS07250 mutS/mutS2 1485009..1487372 (+) 2364 WP_025016289.1 endonuclease MutS2 Machinery gene
  GSF71_RS07255 trxA 1487512..1487823 (+) 312 WP_011374103.1 thioredoxin -
  GSF71_RS07260 - 1488025..1488174 (+) 150 WP_035145780.1 teichoic acid D-Ala incorporation-associated protein DltX -
  GSF71_RS07265 dltA 1488198..1489724 (+) 1527 WP_035145773.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  GSF71_RS07270 dltB 1489717..1490925 (+) 1209 WP_011374105.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  GSF71_RS07275 dltC 1490955..1491191 (+) 237 WP_011374106.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87606.84 Da        Isoelectric Point: 6.1611

>NTDB_id=367278 GSF71_RS07250 WP_025016289.1 1485009..1487372(+) (mutS/mutS2) [Latilactobacillus sakei strain MBEL1397]
MNHKILKTLEYDKIKQMLQGYAITAFGQEQIATLEPINEADLIQIRLNQTKDGVDIERLKGGIPLPQLENIRPHLKRIEI
GAMLNGSELAQIGRVLRATSAVVRFFDDLEKDELELKALPELVAQFVTLPQLTERIRSSVADDGAILDTASTKLRGLRTG
LKQLEGQIRSRMASYTHGAKAKYLSDPIVTIRNDRYVIPVKQEYRGQFGGVVHDQSASGQTLFMEPQAIMELNNRLRQLQ
IEEQQEIERILAELSEAIMPERHNILANAELLGQLDFVNAKAQLAKALKATEPLINAENHVDLKQARHPLIDATKVVAND
IAIGADYQAIVVTGPNTGGKTITLKTLGLVQVMAQSGLFITAREESQVGVFSDIFADIGDEQSIEQNLSTFSAHMENIIQ
ILKQIDDRSLVLLDELGAGTDPQEGAALAIAILDQIGIVGANVVASTHYPELKIYGYNRPQTINASMEFDVATLQPTYRL
LIGVPGRSNAFDISTRLGLPNSIVDQAKQLMNDESQDLNNMITDLENQRKAAETEYQALRHELTEATDLHQQLSTAYQQF
FEDRETEMAKAKEKANAIVEKAEVKADKVITKLRDMQMNQGARIKENQLIDAKAELGQLHQETTLKKNKVLQRAKRRQTL
KVGDDVLVTSYGQRGTLIRQVDSKNWEVQMGIIKMKIANDDLEKQKVVEDNRPQRHVTTVNSGGARHVKAQLDLRGKRYE
EAMAEVDQYIDAALLANYQQVTIVHGKGTGAIRQGVQEYLQANRQVKKYEYAPANAGGNGATIVTFK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=367278 GSF71_RS07250 WP_025016289.1 1485009..1487372(+) (mutS/mutS2) [Latilactobacillus sakei strain MBEL1397]
ATGAATCATAAAATATTAAAAACATTAGAGTACGATAAAATTAAACAAATGTTGCAAGGCTATGCGATTACAGCATTTGG
TCAAGAACAAATAGCAACTTTAGAACCGATTAATGAAGCAGATCTGATTCAGATTCGCTTAAACCAAACCAAAGATGGTG
TTGATATCGAACGGTTAAAAGGTGGCATTCCATTGCCCCAACTGGAAAATATCAGACCACATTTAAAACGAATTGAAATC
GGTGCGATGTTAAATGGTAGTGAGCTCGCTCAAATCGGGCGCGTTTTACGTGCGACATCTGCCGTGGTTCGTTTCTTTGA
TGACCTGGAAAAAGACGAACTCGAATTAAAAGCCTTACCCGAATTAGTAGCGCAATTTGTCACGTTACCGCAATTAACCG
AACGAATTAGAAGTTCGGTGGCTGATGATGGTGCCATTTTAGATACTGCTTCAACCAAGTTACGCGGTTTAAGAACGGGC
TTGAAGCAGTTAGAAGGCCAGATTAGAAGTCGGATGGCCAGCTACACACACGGTGCCAAGGCTAAATATTTAAGTGATCC
GATCGTGACGATTCGTAACGACCGCTACGTGATTCCTGTTAAACAAGAATACCGCGGCCAATTCGGTGGTGTGGTACATG
ATCAAAGTGCCAGTGGGCAAACCCTATTCATGGAACCCCAAGCGATTATGGAATTAAATAACCGTTTGCGCCAATTACAA
ATTGAAGAACAACAAGAAATCGAACGGATTTTGGCGGAATTATCAGAAGCCATCATGCCGGAACGTCACAATATTTTAGC
GAATGCTGAATTATTGGGTCAACTTGATTTCGTGAATGCTAAGGCCCAACTTGCGAAAGCTCTAAAAGCAACGGAACCTT
TAATCAATGCGGAAAACCATGTCGATTTAAAACAGGCACGGCATCCTTTAATTGATGCGACTAAAGTCGTGGCCAATGAT
ATTGCAATCGGTGCGGATTATCAAGCGATTGTGGTAACTGGTCCGAATACCGGTGGTAAAACCATCACACTTAAAACGTT
GGGCTTAGTCCAAGTGATGGCCCAATCAGGGTTATTCATTACTGCGCGTGAAGAAAGCCAAGTTGGTGTCTTCTCAGATA
TCTTTGCTGATATTGGTGACGAACAATCAATCGAACAAAACTTGAGTACTTTCTCAGCACACATGGAAAATATCATTCAG
ATTCTCAAACAGATTGATGATCGGAGTTTGGTGCTATTAGATGAATTAGGTGCCGGGACTGATCCGCAAGAAGGGGCCGC
TTTAGCGATTGCCATCTTGGATCAAATCGGGATTGTCGGAGCCAACGTGGTTGCGTCAACTCATTATCCTGAATTGAAGA
TTTATGGCTACAATCGACCACAAACAATTAATGCCAGCATGGAATTTGATGTGGCGACTTTACAGCCAACGTACCGTCTT
TTAATTGGGGTGCCTGGTCGGAGTAATGCGTTTGATATTTCAACGCGCCTAGGCTTACCAAATTCAATCGTCGATCAAGC
GAAACAGTTAATGAACGATGAAAGCCAAGATTTGAACAATATGATTACCGATCTTGAAAATCAACGTAAAGCGGCTGAAA
CAGAATACCAAGCACTACGGCATGAATTGACGGAAGCGACGGATCTACATCAACAACTCTCAACAGCTTATCAACAATTC
TTTGAAGATCGTGAAACGGAAATGGCGAAGGCTAAGGAAAAAGCGAATGCGATTGTCGAAAAAGCTGAAGTCAAAGCGGA
TAAAGTCATCACTAAATTACGTGATATGCAGATGAATCAAGGCGCACGGATTAAGGAAAATCAATTAATCGATGCCAAGG
CTGAATTAGGGCAATTACATCAAGAAACAACCTTGAAGAAAAATAAGGTCCTCCAACGGGCTAAGCGGCGTCAAACGCTT
AAAGTTGGGGATGACGTCTTGGTCACGTCTTACGGCCAACGAGGCACTTTAATTCGCCAAGTCGATTCGAAAAATTGGGA
AGTCCAAATGGGCATCATCAAGATGAAGATTGCTAATGACGATTTAGAAAAGCAAAAAGTCGTTGAAGATAACCGACCAC
AACGCCATGTGACAACCGTTAATAGCGGTGGCGCACGCCACGTTAAAGCACAATTGGATTTACGAGGCAAACGCTATGAA
GAAGCAATGGCCGAAGTGGATCAATACATTGATGCGGCGCTATTAGCTAATTATCAACAAGTCACGATTGTCCATGGTAA
AGGGACTGGCGCGATTCGCCAAGGGGTTCAAGAATACCTCCAAGCTAACCGTCAAGTGAAGAAGTACGAATATGCACCAG
CTAATGCTGGTGGTAATGGTGCAACCATTGTGACATTTAAGTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(642-682)

MutS domain V (MutS_V)

(330-512)

Smr domain (Smr)

(712-787)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

46.574

100

0.466

Multiple sequence alignment